MmuINT0158427 @ mm9
Intron Retention
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:125065160-125066555:+
Coord C1 exon
chr5:125065160-125065294
Coord A exon
chr5:125065295-125066477
Coord C2 exon
chr5:125066478-125066555
Length
1183 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTGGCTTCTTTTATTTCTAGGAA
3' ss Score
10.37
Exon sequences
Seq C1 exon
ACACAGTTTTAAGTGTCGGATCGGCCCCCAGAAACGTGAATGTGGAAGAACATTATGTCTTCAGATGGCAAAATAATTCCATCAGCGGCCTAGACATCACAGTCATCAGGGCAGAAATCAGTGCCCAGCAGAGAG
Seq A exon
GTGAGGGGTCCAGAATGCTCTCCGTCTGAAGTGTCTCCCTTTCCAGTGGTTTCCAGAACTATAACCCCTCCAGTGAAGCCAGCCTGTGCGTTTTCTTTCACTGAATCAAGGAGTCAGGATTCTTTTGCACAGCAAATGTAATTTCGTGCCAGGCCTGGCGACTTATACCTGAAATGCCAGCACTCCTGAGGCTGAGGCAGGAGGATTGGTAGTGAGTTCAAGAGCAGCCGGGAACATACAGTAAAGCCCTGTCTCGAAAGAACAAGAAAATAAAAGTGATTTTTCTTTTAAAAATTAGATAGTACCTGGCTCAGCTGCTCTTCCAGAGGTCCTGGGTTCAGTTCCCAGCATCTCCATAAGGCAGCTCCGAGGAGATTGAGCATCTCCAAAGACATCTGCAGTGGCACACACACGTGCACACACTTAGATGTGCAACTAAAACTGGCAATAGTAATGTAAATAGTACCATCGGACTGGCAAGAGGGTTCTGCCGGTCACTGAAGGCACCTGTGGCTGACAACCCGAGATGGATCCCGCAGATCCGACAAGGCTAAGTTGTCTTTGGTCCTCCACATGTTTGCCACATACGTGCATGCGAAATATATAAAACGTAACTTTAGAATAAGGAGAAGAGCCAGGCGTGGTGATCCCAGCACTCGGGAGGCAGAGGCAGGGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACCCAAAGAAACCCTGTCTCGAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGAAGAATAGGTTGGACAGGGCGTGCTACCCCATGTCTTTAATCCCAGCACCCAGGAGGCAGAAGTAAGAGGATCTTTGAATTCGAGGCCAGCTTGGTCACAGAGACAAGGTCTAATGCATAACCCCTTATCTGGAATTTTCTGTGTCAACCAGGCTGGCTTCAAACTCACAACCTCCTGAATGCTAGGATTAAATGTGTGCAATACCGCCTGGCTTGTTCCTGTTTTGATTCTTTTTTTAAATCCTCTTCAAGAAAGGGCCTTCATGTGTACCCTGGCCTCAGCCTCAAAGCAATCCTCCTGCCTCAGCCTTACAGCATGCATGCATTATGTTCATGGGAGTTAATTTCTTCTCCCAACAAAATGCTACACATTATGTCTCTGGCTTCTTTTATTTCTAG
Seq C2 exon
GAATGATGACCCAGAGATTCACAGTGAAGTTTTTAAGCCATCACAGTGGTGGTGAGAAGGAATTTTCTGGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386-Tctn2:NM_026486:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.185
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(16.5=100)
A:
NA
C2:
PF077736=DUF1619=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAAGTGTCGGATCGGCCC
R:
TGGATTTCCAGAAAATTCCTTCTCAC
Band lengths:
206-1389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: