HsaINT0165218 @ hg19
Intron Retention
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:25774]
Coordinates
chr12:124179389-124179844:+
Coord C1 exon
chr12:124179389-124179523
Coord A exon
chr12:124179524-124179766
Coord C2 exon
chr12:124179767-124179844
Length
243 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTATTTTGTTTTATTTCTAGGGA
3' ss Score
10.16
Exon sequences
Seq C1 exon
AAACTCCTTTAAATAACGGATCAACCCCTAGAATTGTGAATGTGGAAGAACATTATATTTTCAAATGGAATAATAATACCATCAGTGAAATAAATGTTAAAATTTTTAGGGCAGAGATTAATGCCCACCAGAAAG
Seq A exon
GTAACTTTGATGAGGGTAGCAAGCATGCTTTCACTGAAAAGTATTTTTTTTTCCTCTTTTCAAGATTCTCATAATTATAACCCATAAAACTAAGTTGGACTTGTTTCTTATGTGCATTTATGATTTAATTAACGAGAGTACACTTTGTATGACAAAATGCAATTTTAAGGTAAACACTATGGAGAATAATTTCTTTTCCTAGTGAAATGGTGCACATTATATTTTATTTTGTTTTATTTCTAG
Seq C2 exon
GGATAATGACACAGAGATTTGTAGTAAAATTTTTAAGCTATAATAGTGGTAATGAAGAAGAATTATCTGGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778-TCTN2:NM_024809:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(16.4=100)
A:
NA
C2:
PF077736=DUF1619=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTTTAAATAACGGATCAACCCC
R:
TCCAGATAATTCTTCTTCATTACCAC
Band lengths:
204-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)