GgaINT0007650 @ galGal3
Intron Retention
Gene
ENSGALG00000023683 | TCTN2
Description
NA
Coordinates
chr15:4975576-4976056:-
Coord C1 exon
chr15:4975928-4976056
Coord A exon
chr15:4975654-4975927
Coord C2 exon
chr15:4975576-4975653
Length
274 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTG
5' ss Score
7.44
3' ss Seq
ATTCCTTTTTCTTTTACCAGAAA
3' ss Score
9.1
Exon sequences
Seq C1 exon
AAGGCCTTCCTACTGCAGGGCTTCCATGTCAAAAGGTAACCTTTGCAGAGCATTATGCATTCATTTGGGAAGATGATAACATAGAGGGAGTGAATGTCACAGTCTTCCTTGGAAGTTTATGTGATGGAG
Seq A exon
GTATTGTGACATTTCTTTTACACGTTTTCTATTTACTTTTTTATTTCTTAAGTGTGCAAATTCTTTGATAGGATATCTTAATTAGTAATATTGATTGAAAGTAATTTTCTTTGGACTCTGGAAAGAAAGTGTATGGGGCAAATTTCTGCCAATTTGCATTATCCTGAATCTTCTGGTGCTTAATGAACGACAGAAATTTGTATCCTATATAGGCAGCATACTTTCTACTAATTTAGGTATTTGAAAGTAAAGTCATTCCTTTTTCTTTTACCAG
Seq C2 exon
AAACACTGACACAGAGATTCACAGCTGAATTTGTAAGCTTAAGGAGTGACAGTGCCACAGAAGTGCCTAAGAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683:ENSGALT00000005096:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(16.0=100)
A:
NA
C2:
PF077736=DUF1619=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCTTCCTACTGCAGGG
R:
TGGATTCTTAGGCACTTCTGTGG
Band lengths:
206-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]