BtaINT0146418 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54264007-54265361:-
Coord C1 exon
chr17:54265171-54265361
Coord A exon
chr17:54264134-54265170
Coord C2 exon
chr17:54264007-54264133
Length
1037 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TTTCTCTCATCGATTTGTAGTTC
3' ss Score
7.15
Exon sequences
Seq C1 exon
GAATGCTCATCAGATTTAACAGCACTGTTCAGGGAGTCCTGTTTCCCTGGTGTTTTTGGAGGAGATGTTAATCCTCCCTTTGATCAGCTCTGCTCCATACAGATGTCACATGGAGTCCCCGACTGGTTTCCATTCCTGTGTGTGCAGCTTGCCAACTCACCCTTTCTCGGGTACTTCTACCATGGTTCCAT
Seq A exon
GTAAGTGTCTGAAGGGCTGTCCGGGAGAGGGGTGCGCACCCAGATGGCCCTGGAATGTGGCCATGTCCTGGGGACCTCTCCAAAGGCTCCATTCAATCCCTCCATTCTAGATTCAGTTCTAGGTTTCACATAGTAAGTTTATTTTGTGTTAAGTATTTGAAAGAGCTGGTTGTTGTTCAGTCGCTAAGTCATGTCCAACTCTTTGCGACCCCATGAACTGTAACATGCCAAGCTTCCTTGTCCTTTACTATCTCTCAGAGTTTGCTCAAACTCATGTCCATTGAGTTGATGATGCCATCCAGCCATCTCATCATCTGTCGCTCCTTTCTCCTTCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCCAGTGAGTCGGCTCTTTACCTCAGGTGGCCAAAGTACTGGAGCTTTAGCTTCAGCAGTAGTCCTTCCAATGGATATATAGGGCTGGTTTCCTTTAGGATTGACTGGATTGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTTTCTAGAACCACAGTTCTAAAGCATCAGTTCGTCTGTGCTTAGCCTTCTTTATGGACCAGCTCTCACATCCGTACATGACTACTGAAAAAAACCATAGCTTTGACTATAGGGACCTTTGTTGGCAAAGTCATGTCTCTAGGTTTGTCATACCTTTCCTTCCAAGGAGCAAGCATCTTTTAATTTCATGGCTACAGTCACCATCCACAGTGATTTTGGAGCCCTCATTGAAAAGAAATTGATACCACAAATGGTTAATAGCGATTCTCTGGGTTGGGGGAAAGAGTGATGGGCTCGACTTTAACTTTTTGTCCTTTACATTTCTGTCTTGTTGACATTTTAAAGCAACTTTATTGTTAGCATTGAAGTAAAACTCATGGAACATAAATTAACCATTAACTACTTTAAAACGCACAGGTCAGTGGCATTTAGTACAAATATTATTTTGATAATTAAAAAAGCAGAGAAAAAATGTAAAACAATTGCTTTTATCATGTTAATGGTGGTTTCTCTCATCGATTTGTAG
Seq C2 exon
TTCCTCTGGACATCAAGTTTCCTTTGGCATATATTTGCATACTGATCTAAAAGACTTTTCAGATTTTGGTTACAAACAAGGAGACCCCGTTATGACAGTAGATAAGGCATATTTTACTATTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271:ENSBTAT00000009562:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(23.2=100)
A:
NA
C2:
PF077736=DUF1619=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCTCATCAGATTTAACAGCACT
R:
TATGCCTTATCTACTGTCATAACGGG
Band lengths:
302-1339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development