Special

MmuINT0158439 @ mm10

Intron Retention

Gene
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:124607736-124608642:+
Coord C1 exon
chr5:124607736-124607932
Coord A exon
chr5:124607933-124608518
Coord C2 exon
chr5:124608519-124608642
Length
586 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CAAATCTCTCGGTCTCTCAGTTC
3' ss Score
7.07
Exon sequences
Seq C1 exon
GACTGTCAGCCAGAAGTAAGAGAGCTGTTTGCACAGTCCTGCTTCTCCGGCGTGTTTGGAGGGCACGTCAGCCCTCCGTCCCATCATCACTGCGCTGTCAGCACTACTCACCAGACTCCTGACTGGTTTCCCCTCCTGTGTGTGCAGTCGCCACCCTCTACCTCGCCGTTCCTTGGTCACTTCTACCACGGTGCCAC
Seq A exon
GTGAGTACCTGGACTGCCTGGGAGGGGCCTGCTTCCCAGGGTCGCCAGGTCTCCTTTTACTGGGTTCTTGACTTGGCTCACAATTTTTTCTCTGTACCGTAAAGAAGCCCACGCTAGGTTGTGGTTAGGGAGTCCATGTCAGACATTTCTCCCCAAGTGTCAGAAAGAACTGAGAAACCGCCCCCAGCAGATCCAGCCAGCACTTAGCAATGACTTTCCAGCATGGGGGAAGGAGCCAAGAGCCCCGGGATTTGAACTTCCTGTGTTTTATAGTCCTGTATCATTGAAAACTTTGTAACTATGATCTTCTAAATTAAAAAGGATAATGTAGAGCTGGGGTTAGTGCTGTCTCCCTGTAACCCCAGCAGCCAGCAGGCTGAGACAGGATCAGTAGTTCAAGGTTGTCCTTAGCTACACAGAGAGTTTGCAGTCAGCCTGGGCCGCATGAGACCCTATCAAAGCAAAAATACAGCTGAAGTGTTACTGGTCTTCTTTGTTTTTTATTGTCCTGGGGTGTGTCTCCGGCCTGCGCTCAGGCTAAGCAGGCCCCCTACGGGCCCACTGATCAAATCTCTCGGTCTCTCAG
Seq C2 exon
TTCCCCCAGACATTCCCCCGGCTTTGAAGCCCATTTGCACTTCGACCTAAGAGACTTCGCGGATGCCAGTTACAAGCAAGGAGATCCCATTATGACCACGGAGGGGTATTTTACCATCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386:ENSMUST00000185820:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact

NonCoding

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTCAGCCAGAAGTAAGAGA
R:
GGGGATGGTAAAATACCCCTCC
Band lengths:
318-904
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types