HsaINT0165229 @ hg19
Intron Retention
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:25774]
Coordinates
chr12:124171383-124172724:+
Coord C1 exon
chr12:124171383-124171582
Coord A exon
chr12:124171583-124172597
Coord C2 exon
chr12:124172598-124172724
Length
1015 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
CCTTTCTTATTGATTTTCAGTTC
3' ss Score
9.55
Exon sequences
Seq C1 exon
GAATGCTCATCAAATTTAACAACGCTGTTCAGACGGTCCTGCTTCACCGGCGTGTTTGGAGGAGACGTCAATCCTCCTTTTGATCAGCTCTGCTCTGCTGGGACGACGACACGTGGTGTCCCCGATTGGTTTCCCTTTCTGTGTGTGCAGTCCCCCCTTGCCAACACACCCTTCCTTGGTTACTTCTATCATGGTGCTGT
Seq A exon
GTAAGTGTCTGAGCAGCCGCCTGGGATGGGGCATTGTTCTCCCGCCCTGGTGGGGCCATACTCTAGTAGGCCCTGCAACGCGGTCACGTTTTTCCCAACCCCTCTCCAGAGGTTCCGTGCCTAAAGGGTTCAATTCTAGATTTCAGTTAGCCAATTTATTTTGCATTATTTGGAAGAATTGGGCCTCATTGAAAAGAAATTGATTGACATTGAAAACAGCTCATGGTGCTTTTCTAGGGGAGGTGAAGGAGTGGTGGCTCATGGGAGATTTTAATGTTCTGTATTTTACAGTTTGGGATTGTTAAAAATTTACATCTATGATTTTTGTAATTAAAAAGTAGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCACGTGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCCTGAACCCGGGCGGCGGAGCTTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGGCCCAAAACAAACAAAACAAAACAAAGTAAAGAGGCTGGGTGCAGTGGGTCACGTCTGTAATCCCAGCACTTTGGGATGCTGAGGCAGGGTGATCACCTGAGGTTGGGAGTTCAAGACGAGCCTGGGTACGTGGTGAAACCCCATCTTTACTAAAAATACAAAAAATTAGCCAGGTGTGGTGGTGGGCACCTGTAATCCCAGCTTACTCGGGAGACTGAGGCACAAGAATTGCTTGAACCTGGGAGGCGGAGGTAGCAGTGAACAAAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAGAAAACAAGAGTAAAGAACAACATTAAGGAAGAATTGTGTTTTAGCAGATAACTGAAACTATTCAGCCTTTCTTATTGATTTTCAG
Seq C2 exon
TTCCCCCAAACAGGACTCTTCCTTTGAAGTATATGTGGATACTGACGCAAAAGACTTTGCAGACTTTGGTTACAAACAAGGAGATCCCATTATGACTGTAAAGAAGGCATATTTTACTATTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778-TCTN2:NM_024809:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(24.1=100)
A:
NA
C2:
PF077736=DUF1619=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTCATCAAATTTAACAACGCTG
R:
CTGCGGAATAGTAAAATATGCCTTCT
Band lengths:
326-1341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)