MmuINT0158439 @ mm9
Intron Retention
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:125057745-125058651:+
Coord C1 exon
chr5:125057745-125057941
Coord A exon
chr5:125057942-125058527
Coord C2 exon
chr5:125058528-125058651
Length
586 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CAAATCTCTCGGTCTCTCAGTTC
3' ss Score
7.07
Exon sequences
Seq C1 exon
GACTGTCAGCCAGAAGTAAGAGAGCTGTTTGCACAGTCCTGCTTCTCCGGCGTGTTTGGAGGGCACGTCAGCCCTCCGTCCCATCATCACTGCGCTGTCAGCACTACTCACCAGACTCCTGACTGGTTTCCCCTCCTGTGTGTGCAGTCGCCACCCTCTACCTCGCCGTTCCTTGGTCACTTCTACCACGGTGCCAC
Seq A exon
GTGAGTACCTGGACTGCCTGGGAGGGGCCTGCTTCCCAGGGTCGCCAGGTCTCCTTTTACTGGGTTCTTGACTTGGCTCACAATTTTTTCTCTGTACCGTAAAGAAGCCCACGCTAGGTTGTGGTTAGGGAGTCCATGTCAGACATTTCTCCCCAAGTGTCAGAAAGAACTGAGAAACCGCCCCCAGCAGATCCAGCCAGCACTTAGCAATGACTTTCCAGCATGGGGGAAGGAGCCAAGAGCCCCGGGATTTGAACTTCCTGTGTTTTATAGTCCTGTATCATTGAAAACTTTGTAACTATGATCTTCTAAATTAAAAAGGATAATGTAGAGCTGGGGTTAGTGCTGTCTCCCTGTAACCCCAGCAGCCAGCAGGCTGAGACAGGATCAGTAGTTCAAGGTTGTCCTTAGCTACACAGAGAGTTTGCAGTCAGCCTGGGCCGCATGAGACCCTATCAAAGCAAAAATACAGCTGAAGTGTTACTGGTCTTCTTTGTTTTTTATTGTCCTGGGGTGTGTCTCCGGCCTGCGCTCAGGCTAAGCAGGCCCCCTACGGGCCCACTGATCAAATCTCTCGGTCTCTCAG
Seq C2 exon
TTCCCCCAGACATTCCCCCGGCTTTGAAGCCCATTTGCACTTCGACCTAAGAGACTTCGCGGATGCCAGTTACAAGCAAGGAGATCCCATTATGACCACGGAGGGGTATTTTACCATCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386-Tctn2:NM_026486:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(23.9=100)
A:
NA
C2:
PF077736=DUF1619=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTCAGCCAGAAGTAAGAGA
R:
GGGGATGGTAAAATACCCCTCC
Band lengths:
318-904
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: