BtaINT0146745 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32262285-32265670:+
Coord C1 exon
chr15:32262285-32262348
Coord A exon
chr15:32262349-32265536
Coord C2 exon
chr15:32265537-32265670
Length
3188 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACCACCCTCTCTCTTGACAGTTC
3' ss Score
12.02
Exon sequences
Seq C1 exon
ATGAATTATTCATCATTACTTAGAATTTGGGTCTCTTTCATCTTCGCACTTGTATGGCACCAAG
Seq A exon
GTGAGTACTACAAAATTCCATAAAGCTCGTGATTAGCACTCTCTTGAATTTATAAAGAGACGCTTTTGTTGGAGCCATAATTGTCAGGGCAGGTGTACATGTGTCTACTGTTATAACAAGAAAAATGTAAATTAAATTCTGTTGTCAAGGGCAAAATATATTAACTTTGAATGATGTTCACTTACATCCCTACTTTTTCTTATTTTACTTGGAACACAATTGCTTATACCAGGTTGCCCCATGTAAATGGAGTTGGTCTTTAAGATAATGCAAATTATTTTCATTAAAAGTATACAGGCTTGGTGCATGTGCACCCTGTCCCAGATGACTGATTTCAATGAAGGCATTGAACTGGTGGCACAAACTTAAAAAAAAAAATACACTTATTTAAGCCAAAATCAGGAAGGTTCAATGACATTAATGTCAGTGACTTGAGTCTCAGTGACCATTTACAATGGCCAAAAATCTAAAACTGCAAGTGAAATAAGAAAATTATTCCCCTCCGTGATTTCTCTTTTTTCTCTATGTAGCATTGCCTGGGGTAGGTAAAAGATTGCATGGATTTCTTTCTACAGTTTTTGGATTTTAGACTAGAAACATAGGAAAGTTTATATTGATTTGAAACTTTCCTGGCTAAAATTCTAGAGCATCTGTCTTGGTTTTGTTTGTTTAGTTGAACAGACACATGATCACAAGTCTGAGGGAACAGGTGTATGAGGTGTGTGGAGCCCTACCATTTTCCTAGGGTTGGATAAATTTAAGCAGCTATATCGGGCAGGCCATGGTGTGAAACCCCACAATAATGAGTCCCTCTGCCCCTCACCTACTGCTGCACAAAGTATGTCTTATTTGTTGGGGGAAAAAATTCCTGGAAACATAGTTATGTTTACTGTAAATTCCCTGCTTAAGATCCTATGAATAAGGAGTTTTCTTTTATTAACCCTGATGCTATCAACAAGCCATGTTGTTAACAAGTCATATTTTTATAATGGTAATGACTTCTAAAGTGGAAATTACTATAGTTTAAACATACTCTCTTTTATCTTTTATTAAACACCTTTTTTTTTTTCATTCAACAAGTATTTGCTACGTACTTGCAATATTAGATATCCTGATTCTTTGTATTCTTATATGGAAATTTTTTAATTGTCCATTCTTTTCCTGTCCAAAATCATGAACTAATTAGGATCACTCATGAAGAAAGGACTCTTGCAAATTTGCATTGCCTTTGGAGCAGAGAGAGAAGTTAGAGACAGTCTCTCTGACCATAGTTTTCTGTCTCCTCCAAGAGGGGTGAGGAGTTTCCATTTCCTTGGCAGCTGCCCTGAATACAAATTACTCTTTCCATTCAAATGATTACAATTCAGCGTGAATCAGGCCCTTATTTACACTTGGGCATCACTCCTAAAAAGTTTCCCATGAAGGATAAATCCATAGCAAGATTTGATTTATTATTATTATTAATTTGAGAAAGCTCATTACCCTTCAAATTTAATAAGTACCTATATAGAATACCATGATAAGGATCACAAAGAAATTTTTAAAAAATTCCTCCCTTCTAAGAATTTGGAGTTTGTTACGTCTATGTAATTATGACTGTTAGAAAAGAATCCTTTCTTGTCTACTGATCGTGACACTAAATAAAGCACGTGGGCTGAGAGCTCCTGTGATGAAATTAATTATAGCACCTCTGAAAGCTCCTTCCTTTGGCTAGCTTTGCAGCAACTTCTGCAGGCTGGCTTGTTCACTAAAGACCAGACTCCTTTTCCCCGTTTTCCTCTTATATTAATCCTTGGCAACAGAGGAGCTCTTCCTCCAGGCAGACCTCCTGGAATTCCCTTCTTCAGGAGGAGAGAAGCTGGCACCTGGCCCTGCTGAGTGGCTTTCTGGTCACTCTGTTTCTCTCTTCCATGAACTGCTATCTGCTCACTAAGACTCCCAGAGGAGCAGGGCAACCACTGGCCAATTGCTCGTTAGCCTATCGACTCTATCAACACAGAGCAGGGACTTTTCTAAGGAGGCCCCCCTCCACCCAACCTGAGGATGGGGTGTCAGCCTCTGGACTGTGGCCATCAGGTACCTCATGAACTGTCAGCAGAAGCCCCAAATGGATGCACTGCTGTCCCTGGAAACTAACACACAGTTTTAGAACATGGAAGAAAAGATGATGTCCTATTGCTCTATTTTCACCCAAGAAGAGAAGGGACACAGGCAGAGAAAAAGTATCAGTGGAATGTAATTAATTAATGTAATGTAATCCTGAATGTAGATTAGTTCACACAAGCCACTGGACCTGATCATTGGTAATGAAGACCCTAGAGAAGCTAATTTCTATTAGCTGGGCCACCTTTTGCAAGAGTTTGGATGAGAAACTTGAGAAATAAGCCAAGTTGCCAAGAGAGGTGGTGACAGGGTTGCAGGAGGTGAGGTGTATGTGTCTGTGTGGTGACTCTCACCTTTGACCAGGGTGATAAGTCAGATCCCCCAGCCTCCTCTCCAAAGAGCTCACAGAGGCCCAACCTTCTGTGCCCCAGAGTATCCCATGTCTGGCTTTGTAAACAGGAGCCGGGCAGGGAGCCTTCTCACGGGGCTGGAGCTCAATCAAGGTCATTCACGGGCCACTTACTACAAACCCTCTCCTCCCACCCTTGTCCCAGATCCAACTATTGTCTGTTTCCTCTGGGATCTGCTATCTTCTCCTATTGTGCAGTAGGAAGAAGGGGACTCCTTTCAGGAAAAGCCTTGATAGTAGAATTCTTGAGCTAGGAGGGAATTTCAGAGCCACCGGCCACATTCTCTGTATGCTGCCTTCTGATCAAGGATCAAGCCAGCTAAGCCCCGCCAGACCCAGAGGCCCCTCTCAGTGCTCTGAGAGCTCTGGGCAGGGTCAATTTCACAACCTTCCAGCCAATGGTGCCCATTGCTGTCTCCTAAATGTATGAAAATATAGAATGAAGCAGGAAGTGATTTCTCTTAAGGAGAAACATCATCACTTCCATGCTCCTCTTTCCGGAGGCAGAAGATCATGCACTGTGTCCAGCTGAGGTTTAGGATAAATAAAAAGCCCACCTGATGTGTGTGCCATTTGTAACTTACTGGAAGAAGCTGGATCTAGTGGGTGGGAAGGAAGCAGCTTGCCTAATGGAGGGGGGATCTGCTGTCTACCTAACCACCCTCTCTCTTGACAG
Seq C2 exon
TTCAGCCCAGGGAACTCATGTATCCATTTTGGCAGAATGACACCAAAACCCCTAAAGTGGACGATGGAAGCTCATCTGAGATTAAGCTAGCCATTCCCGTCTTCTTCTTCGGTGTTCCTTACCGTACTGTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456:ENSBTAT00000047085:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development