MmuINT1032899 @ mm10
Intron Retention
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42394933-42398277:-
Coord C1 exon
chr9:42398213-42398277
Coord A exon
chr9:42395067-42398212
Coord C2 exon
chr9:42394933-42395066
Length
3146 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACCACCATCTCTCTTGACAGCTC
3' ss Score
10.18
Exon sequences
Seq C1 exon
GATGAATTATTCATCATTACTTAGAATTTGGGTCTCTTTCATCTTCGCTCTTGTTCGGCACCAAG
Seq A exon
GTGAGTACGACAGCATCTCCTACAGCTCTTGATCAGCATGCTCTTGAATTTATAAAGAGACACTTTTGTTGGCACCGTAATTGCAAGGGCAGGTGTACATGTGTCTGCAGATACAACAAGGGAAAAAAGTAAATTAAATTCTGTTGTCAAGGGTAAGATGTATTAACTTTGAATGATGCTCACTTTCTCTTATTTAACTTCGAACACAATTTGTATATGCCAGCGAAAGTCTTTAAAACAACACAGACTAATGCTAGCTCCAGTACTTGCAGGAGATGAGGGTGTCCACCTCCTCCCTCATCACTGATACCCATTTAGCCCTTTAGCTTATGTGAGAGACTTTAAAGCGTGATTGTGTTTTGACTCAGGGTTAGGAAGTGGCAGTAGTAGCCTTGGTGTTGATATCTTGTGTCTCAGAGACCTAGGACATAGGCCAACAATGGAAAGCTACAAATAAACAAGCTAGTTGACTCCTTCAGCCCTCATGGGCCCTTCTTTCTCTCTGTATCTCTCTTAAGTTAGTGAAGGACTGTGCATATGCCACCCTGCCATTGTACATGAGTTTTTAGATTAGAAAGATAGGGCAATTGACATAAGTCTTTTAGGACTAATATTCCAAAACACCTTTGTTTAGTCTGTGGAGTTCAGTTGCTGCATAGTGCCAGGTCTTAGATGAACCTTCCCTTTAAGATCATGCCCGTTGTCCTAGAATGTGTTAATAGTGGACCAACACATCCCAAAGTAACAGTAGAGTGGTTTCCCTACAATTAACCCAGTGACTCCATCTTCCACCTCTACACCAAGGATGTGTAGTTTTCTTTGGTGAAAGAGCAAAGTCCTGGAAACCTAACTATATTTATTGTGTGATTCCCTGTTTAAAGTGAGCATGGGTAGGGATAGTGTTTCTGTTGCTAACTGCGACACTATCAATTGGCCCAGGTGCTAATAGTTCTATTTTCAATAGTAATTGCTTCTGAGATGGGAATCGGTTGTTGTTTTTGCCTGGTTCCTTTAGTCGAGTGCCATGTTTTATTCAACAAATCTTTCCTGAGGTTGTACAGTATTAGATGGACTTATCTAATGTTTTTTCAGACGGAAAACTTTAAACTGTTATTTCTGTTCAAAAATCACAAACTAAGTGAGGAATCTTGGAACCAGAGAGAAGTTGGGTCCCCTGTTGCCAGTGTTTTCTGTGTCCTCAGAAAGGGGGTTTGATTGTCTCTTCTCCAGACAGATTGCCCAGAGCTGTACAAAATACCAATGAACTTTTGCATGGAAGTGATTACTGTGCTGTGTGACCTGGAGCCCTTTTCCATACTGGGCATGACTCCCAAAAAGCTCCCCAGGAAACACAAACCTGTAGCTTGACAGCTATATGCACGAGTAATTCAAGACAATCGGTCACCTTCAAATCTAATACGTGCCTGTGTTTAATGCCTGTGTAAGATGGCAACGAATTTTTTGGAGGTTTTCATGGTCTAGAAATTTGTACTTTACTACCATATTGTAAATAAGAATATTCCAAGAGCCTTTCTAAATACTTATTGTGACATCAAACACAGTTCACTGGCTGAATGCTCCTGAGATTAAATCGGCCACAGCATCTCCTACAGGTTAAGATTTGGGCAGCTTCCCAGAAACTTCTGAGATGTGGGAACGATGTGTAAATACTAATGGCTGGACTAGTTCCCCTGTTTTCCTGATGCTCTCCCTCAGAGATTATACCTCTGTCTGGACAGACCTGCTCCAACTCCCTACTCCAGAGCTAGAGAGCTTTGCCTGACCCTCCTAGCAGCTATCTGTCTACTCTGCAAGCTATTTTGGGAGGCTGTTGTCTGCTCACTAACGGGCTCTCCCAGGGGAAGAACTAGCTGGGACCAGTTCCTCTCTACCCTTTCGGCTCCATCAGTACAAAGTGGGGACTTTCCCAGAGAGCTGATATGAGGCTGGGCATCAGTCTCTGGATGGGCTTGAGGGCTGTGGCCACAGCCCAACATGGATCAGCTATTCCATCCCCACTCCCAGAAAACAACTGATAAATGTTCAAAGGAAGAAAACTATTCTGTTGTCCACCTTTCATTCAAAAGAAGAAAGAGCAGAGGCAGAGAGAAGTGACATCAGATGTGACATGCAGATTATTTCCGAGGTACAGTTGTACTGGGTCCTTGGTAGCGCAGGCCCTGGGGACATTGCTTTATTTTTCCCACCAGTCGGAGCCACACCTTGCAAGAGTTTTCGTGGGAAACTCCAGAGTCTGTGCTCCAAGCATCCAGGGAGGAAGTGCTGCTGCCCCAGGTGGGGTCTGTGTAATGACTCACCTTTGACTATGAGGACCAGGAAGAACACTGTCTGCCCTACAGAGTACTCCAGCACTGCAAACCCCTCCGTGCATGTACGCATGCATGCACACTCACTAACACACACATACACATGCACCCACACATGCATTCACACATGCACACAGGCACCTCCCTCTGCTGCCTCCAGGATCCCATGTTTGCTGTTTTTTGTGAATAGAGCTGGACAGAACTCCATGGGCTGATCTTAGTCAAGGTCACTCACAGACAGTTCCTACCAACCCTCTCCTCCCGTTGTCTTGGTTCAGTTACTCCTCTTGGGCTCTGATGACTTCTGCTATGTGATAGGAAAGAAAGGAGTCTTAAGAAAAGCTGCCATGACTGTCTCAGCAAATCGTAGAATTCTTAGATAGGAGGGTGCTCTTTGGTTACATCCACATTCTCTTCATCTGGTCATCTACTCAAGAGGCAAGCCCTTCTCACCCACGCACGCCACATCTAAAGGCCACCTCTGGACACCGAGAGCTCCAGGTACCCATGGTGGTATGACATCCCCACTTCACTGTCACCACTGCTCTCTCTAATGCATGGACACACTGGAATAGAGCACATAGGTCTCTGTCTTAATCAGAGACCATGTCCCTTCTGTTCTTTCCTTTCCCAAAGACACAAGATCATCAGCTAGGTATTGCACAGATTCAGACTGGCAAGGCTGAGGCCTGCTGCCTTGCTTTGGGCTTGTAAACCATACTCAGACAAGCTGACTTTAGTAGGTGGGAGGGATAGTAGCTTGCCAAATGGAAGAGGCAGCTGCCGTCTAATCTATCTAACCACCATCTCTCTTGACAG
Seq C2 exon
CTCAGCCCAGGGAGCTCATGTATCCATTTTGGCAGAATGACACGAGAACCCCTAAAGTAGATGACGGAAGCTCCTCTGAGATTAAGTTGGCCATCCCCGTCTTCTTCTTTGGTGTTCCTTACCGCACCGTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705:ENSMUST00000042190:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types