GgaINT0138310 @ galGal4
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3550419-3551664:-
Coord C1 exon
chr24:3551600-3551664
Coord A exon
chr24:3550553-3551599
Coord C2 exon
chr24:3550419-3550552
Length
1047 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
TGAACCCCCTCTCCTTGCAGCTC
3' ss Score
11.87
Exon sequences
Seq C1 exon
GATGAACACACGATCGTTGCTCAGTGCCTGGGCAGCCCTGTTGGTGGTAACCGTGCGGCACCGAG
Seq A exon
GTCAGTACTGCTCCCAAAAAACATCCCCTTCCCCTTGGTCAGAGTGTAACAGCAAACACAGTGTTTCCCCGGGTCTGGAGGGGTGGGAGAATGGGTAAGCACAGGCACTAATTGTGCAGTGGTGACAGAGTGCACTGCAGCAATGGACCTCCTGCCCGCACAAATGGCCCTTGCCTCACTGGGACCAGTGAAGCAAGGGTAGTTCAGGTTAAATGAGGAGCTGCCATACTGCTGGGAATCTGAAGTTGGCAAAGCTGATAGGTACAGCAATCCCAGCAGCTCTGCAGACCTCTAAGCACGTAAACTAAGTGAGCATGCGTTGTGCATACATCTGAGTGCACACACGGAGCTCGCAGTGGTTTTGCCATGGTACAGAATAGGGCCATGAAGAATTCCCAGTGACAAAGATGTGCCAAGAAAATGGTAAACTGGATGAGCAGCAATCTGGTGTGGGGCTGACCTCAGGATCCCAAGGAACTCGGAGCTTTTTTAGGGTGCCAGCAGGGTTAGGTCAGGTTTCCCTTTGTCTCCTTCCTCCTTGAGGCTAGACTGGGTTGGAGGGGTTCACTGGTGACACTGGCAGGCAGCCTCAAGCAGGGACCATCCTTGGGGTTGCTGAATTGAGTATCTTTGGTGTCACTGAGCAGTGCAACTTGGGGCTGCTAGGTGGTACATCCTTAGGGCTGCCGAGCGCAGCATCCCCAGCTCAGGCAGCACAGAGCCCCATTTCTGTAAGCAAGACCTGTGAGCAGGCTGTCTGCAACCAGGGGCCTCTGAGAGGTGCAGGTTAGGACCTGGGAAATAAAAGCATGTTCCAAACTGAGGTAAACAGAGCTGGGATTGTTTGGAAGCATTGTGGCTCCCCTTAGCTCTGCTCAAATGTCACAAGGGCTGTGTGCTGCTTTTCTACATCAAAGAGAGGAGGAGGGGAAAGAAAGCCCATCTAAGTCTCTGTTTGCTCAATGAAGGGTTTTGCTGGGTGCCCCACTGTGCCCTCCCCAAAACCGGGACGGGTCCCTGTAGGCACTGAACCCCCTCTCCTTGCAG
Seq C2 exon
CTCACGCCATGGCAAGTCTGTACCCATTTTGGCCAAACGACACAAAAACTCCCAAAGTGGATGATGGGAGCTCTCCTGAGATCAAGCTCTCTGTTCCGTTCATCTTCTTTGGAGCCCCATACAGGACGGTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000040861:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACACACGATCGTTGCT
R:
TAAACCGTCCTGTATGGGGCT
Band lengths:
198-1245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]