HsaINT0165580 @ hg38
Intron Retention
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr11:121102665-121105964:+
Coord C1 exon
chr11:121102665-121102729
Coord A exon
chr11:121102730-121105830
Coord C2 exon
chr11:121105831-121105964
Length
3101 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACCATCATCTCTCTTGACAGCTC
3' ss Score
10.18
Exon sequences
Seq C1 exon
GATGAATTATTCATCATTCCTTAGAATTTGGGTCTCTTTCATCTTCGCACTTGTACAGCACCAAG
Seq A exon
GTGAGTACTACAGAATTCCATAAAGCTCTCAGTTAGCATGCTCTTGAATTGATAAAGAGACACTTTTATTGGAACCACAATTGTAAGGGCAGGTGCATGTGTGTCTACAGATACAAGAGAAAAATGTAATTAAATTCTATTATCAAGGGTAAAATTCATTAACTTTAAATGAGGTTTACTTATATTCCCACTTTTTTCTTATTTAACTTCAAATACTATTTGTATGTACCAGCTTGCCCTGTGCTAGTGGAGTAGATCTTTAAAATTACGCAAAATTATTTCCATTAAAAGTAGATAAGATAGGGGTATGTGCACTTCATGTCTGATCACTGATTTCCATTAAGGCATTTAATTTGTGGTGGAGACTTTAAAGAATCTACTTATTTCGGCCAAAAACTAGGAAATTACAATAGCATTGATGTCAGTGGTTTGTGTATCAGTGACCTTTTACGTGGCCCTCAAATCTAAAACTTAAATAAGACAATTTTTCCCCTCAGTGATTCCTTCTTTTTCTCTGTGTAGCACTGCCCTGGGTAAGTGAAAGGCCACATATGTCTTTTTTCTACTGTTGTTTTGGATTTTAGACAAAGACGGGGCGGTCTACGTAGATTTTAACTTTTTATGGCTAAAATTCTAAGGCACCTTTCTTTACCTTGCGAGTTTGTCTAGTTCAAGTGGCACATGAGTACAAGTCTGAGATGAACACGTCAAGCCCCTGTGCAGTGCTAATATTTTTCCAGAATTGGTGAATTTAAGCAGTTAAACCATAGTGTGAAACCCCACGGGAATGAAAGAGGGCCCTTGACTTCAACCTCCTACCCCAGCTCCAAGAAAGTACATTTTATTTGGTGGGAAAAAAAAAATCCTGGAAACATAGCTATGTTTATTGTGAAATTCTCAGCTTAGGGCAAGCATGGATAGGGATATTCTTTCTTTTAGCAACTCTGATGTTATTGATAGGCCATGCTGCTAACAGTTTTATATATATATATAAAAATAATAATGGCTTCTGCAGTGTTAATTACCGTAGTTTAAACCTACGCCCTTGTGTTTAGCACCCTCTTTTTCATTTGACAAGTATTATTTACCATATTAGATATTCTTAATGTTTGTATCCTTCTTAAAATTAAAAATATTTAACAGTCCGTTCTTTCCTATTCAAAATTGTGAACTAATTAGGATCACCCACGAAGAGAAGAATCTTGCAAACTGCCTCACCTTTGCAGCAGAAGAGGAAGTTAGGGTCATTCTCCCTGGCCATGGTTTTCCGTCTCCTCCATGCGGTATTATGGGTTTTCCATTCCCTAGGCAGATTGGCCAATCAGTGCAGCCCAAAATACCAATTAATCTTTCCATACAGATGATGATAATTCAGTGTGAATTTGAGCCCTCATTCATACTTGGGCATGACTCCTAAAAAGTTCCCCATGAAGGATAAATCCATGCCAGGACATAATTTGTTACTGTTAACTTCAGAAATAAGTACCTGTGTATAATACTGTAGTAGAGATTATAAAGATTTTTTTTAATTAGTACTTCCAGGAATTTTTAATTTGTTACTATTATGTAAATAGAAATGTTAGAAGACCCCTTTTCACCTGCTGGTTGTGACATTAAATACAGCTCATGGGCCCAGAGTGCCTATGACCCGACACAGCGCCTCCTACAGCCTCAAATTCGGGCTGCTTCTCAGCAACTTCTGGGGTTTGGACGATGCATATACACGAATGACCAGATTAGTTTTGCTGCTCTCCTTGGATGTCAGCCCCTGGAAAGAAATTAGCCCTCCGTTGAGGCATAACTCCTCTTGCTCCCTGCTTCAGAACTGGAGAGCTGGCTCTTGGCCTGGTGCAACAGGCCTGCTTTCTGGCCGCTTTGCACTCCTCTCTTTTACATGAGCTGTTGTCTGTTCACCAAAAGCCTCCCAAAGGAGCAAAGACAGTCCTTGGCCGGTTGCTCCCCAGCCTATTGCTTCCATCAGCACAGAGCAGGGACTTTCCCAAGTAGAAGGCCCGACATGAGAATGGGGGTGTCGGCATCTCATAGCAGCAAGCAGGTACCTCAAGAAGTGTGGCCGATGCCCAGCATGGTCTTGCCCCTGCCCCCGAGAATGAGAAATTTAAAGAAAGGAAAAAAGGGAGAAAACGATAGTGTCCTATTGTCTTATATTCATTCAGGAGAAGAAAGGACAGAGGCAAAGAAAAGTAACACCCAAAATGTAGATTATTTCACAGATGCTATTGGACTTGATCCTCAGTGATGCAGACCCTAGGGAACTTGTCTCATTTCTCCCACAAAACTGAGCCACATCTTGCAACAGTATGGACGGGAAACCTGGGAGCAGCAAGCCAGGAGAGGAGGTGACCCTGTCACAGCGGGATGCAGTGTGTGTTTGTGTGATGGCTCTCCAGTGACCAGGAGGACCAATCAGAGCCCTGCAATTCATTCTCTCCAAAGAGTTCTCAAGGACCCAACCCTCTGACCCCGGAGGATCTCATGTCTGTCTTTTGTAAAAAAGGAGTTGGGCAAAGAGCCTCTTGCAGGGCCGCCCTCAATCAAGGTCATTCATGGGCCAATTGCTACAAATCCTCTCCTCCCACTTTTGTCTCAGTTCCCACTGTTGTTTATTTCCTTCTGGGATCTGGGATTTTCTCCAATTGTGCAGCAAGAGGGAGGGAACTCCTTTCAGGAAAACACACGATAGTGGAATTCTTGAGCTAGAACAGGAGCTTCAAAACTGTGGCCATGCCAGACCTAGAGGCTGCCTCTCAGTATCCAGAAAGCTCAAGGTTTCCAGGGAAATTTCACAAATTTCCAGCCAGCTGTAGCCATAGATATCACCAAGATGCATGAAAGTGCAAGAACATGCACAAAGTGCTTTCTCCTATGGAGAAACAATGTCACTCCCATTTTCCCGTTTCCCAGAGCAGAAGATACTGCGCTGTGTATGGCCTAGGTTTAGGATGAATGACAGGGCAGTATGACTTGCATTCAGCTTGCAAGCCCTACTGAAAGAAGCTGGCTTCAGTAGGTAGGAGAGATGTAGATTGCCAAACGGCAGAGGGAGCTGCCATCTATCTAACCATCATCTCTCTTGACAG
Seq C2 exon
CTCAGCCCAGGGAGCTCATGTATCCATTTTGGCAGAATGACACCAAAACCCCTAAAGTAGATGATGGAAGCTCATCTGAGATTAAGTTGGCCATCCCAGTTTTCTTCTTTGGCGTTCCTTACCGCACTGTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927:ENST00000392793:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains