BtaINT0146751 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32328614-32332149:+
Coord C1 exon
chr15:32328614-32328918
Coord A exon
chr15:32328919-32332038
Coord C2 exon
chr15:32332039-32332149
Length
3120 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
3' ss Seq
CTGTTTGTTTTCCTTTTTAGCAG
3' ss Score
10.63
Exon sequences
Seq C1 exon
TCTGACTGCATCTTTCACCCCCAGCTGCAACGAGCTGCAGTTCTCACAGTACGCAGCCATGTGCGACAACGTGCACATCCAGGACATGCAGGGCGACGGCTACTGCCTGAAGCTCACGGACATGAAGGGCTTCTTCCAGCCCTGCTACGGGCTGCTCGACCCCCTCCCCTTCTACGAGTCCTGCTACCTGGACGGCTGCTACAACCACAAGAAGTTCCAGCTGTGTGGCTCCCTGGCCGCCTACGGGGAGTCCTGCCGCTCCTTGGGAATCCTCAGCACTGAGTGGATTGAGAAGGAGAATTGCT
Seq A exon
GTAAGAGAATTATTTTATTTCTGCAGACTCTTCTCTGAGTTAGAAAGCACAGCTTGGCCAGTGGCGTCACTTTGTCCGGGGCTAGCCACTGGTCTCCATCTCAACCTGTAGATCTGCTTTGGGGGTTGAAGGATAGAGAGGTGTGGGCTGCAGGAGATTCTGTGAGGGGGCACTTTCAGTGGCTCTTGACTCCCCCCTAGGTCCAGTTATGGAATTCAGAATATCAGCGGAGGAAGGTGGGGTTCTCTGGGTTGGAAGAGCACCAGTGTAGTGACTTCTAAGACAGCAGGACTGAGCATGGGACTCCTAATTGATTTCAGTGCCCCCAATTCAGCTCTCCAAAAGCTCCTTTCACAAGAGTCAGAGCCCAGATCACAAAGAGAAGGCAGGTGGCAAATGGCAGACTGAGCTGGCTGTATCTGCCTGGTTGCAAGGAAGCCATGATTAGATTTATAAAGGGATTATACGTGTGCTATTGATGAAATAAAAATCTATAGACTCTTGAATTTTTTTTTCTGTAGTGAGATAACTACTTTGATGTCCATTATCTATTATTCTCTTTATTTGTTTTCTTGCCATGTTAATCAGATAGATGGAGCAAGTAAGTGTGTGCCTAAACACGCATAAATTTGTCATATCCGTATATGTGTGTCCATGTACATAAATGGTCACTCTGTCCCATGAATGCAGTGTGACACTACGTCCATCAGAATGTGTGCTTGTCCCTCGAGGCACAACAGCAGCCCCGTGTACATACCGGTACCGCCGTGCAAACTGGCCCTGTTTGTTTCAAGACGGAGTGTTCTCGTCAGTAAGTCTGCACACCACACCTGACAAGAGTAGGGATACACAATTCAGAACCTGAAAACAATGTCGCTAATTAAAATATGCACTCAGTAATTTCAGAAACTCTTAAGCAAATGGAGTAGTTTCTGTTGGCAATCAATAGAAATGTTTTGTTTGGTAACTTTAATATTTTACCCTCTTCTGTTGATAAGCAATACTTTAAAGAGCCTAAACTGTCTTGAACTTCAGAAATTGTCTGGAATTTTAAAAAAATATATCAGTTTTTGTTTTTAACCTCAAAACTTAACCTCTGTATTGGGCATGTTGTATCTGCCAAGTAGTAAATGGCCCACTCTGATTGTAAGTGAGGTTTTTGTCTTCTTGGGAGCTGTAACCTCCACACTTTTTTCCTCCTATTCTCCTCGGTGGTTTGCATATTGTGTTCATCAACCAGCACATTCATTGGGTGGCTGCTGTGTGCTTAGCACTGTCTTGGGTGCTGAACGCACTAGGCAATAAATGGGTCTTTAGAAAAAGAAGCTTTTAAGAAATAAGTATATTTGGTGGAATATTACTTGGCTATTAAAAAGAAATAATGCCATTTGTAGCAACAAGGGTGGATCTGCTGCTGCTGCTGCTGCTCAGTCGCTTCAATCACGTCTGACTCTGTGTGACCCCATAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGGTTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCTGACCTAGAGAGTGTCATACTGAGTGAAGTAAGTCAGATAGAGGATAAGTGATATCCTATGGCATCCCTTATGTGTGGAATCGGAAAAGAAATTATACAAATGAACTTATTTACAAAACAGAAAGAGCTTCACTGTTTAGAGCACAAACTTATGGTTGCAAGGAGGAAGGATGGGAGAAGGGATGGTTAGGGAATTTGGAATGGTCATGTACACACTGCTATATGTAAAATAGAAAAGCAACAAAGGACTACTGTATAGCCCAGGGGACTCTGCTCAATGTTACGTGGCAGCCTGGGTGGGAGGGGAGTTCGGGGGAGAATGGATACAGGTATATGTATGGCTGGGTCCCTTCACTGTTCACCTGAAGCTATCACAACACTGTTAATTGGCTATTCCCCAATATAAAATAAAAAGTTTAAACTGCAAAAATAATAAGTAAGTGTATTTAGCTGATGGTGAGGGCTCTACTTTAGTCATCTTTCTAGGAATTAAGACAGACTGATGCGACTCCATTCCTGTCCTCTCACCTGTTATAATGGTTATTTAGCAGAAGGTCAGGAGAAGTATCTGCAGTTACGGGACAGCTTGAGGGGTTTGTTTTGTTTTGTTTTTAAACTCTTGAAGCTAACTTGGCTCATGCTGGAGTTGAATCATGGCTGTTTCTTTAACACTTACTGTTAGAAACCATGACAACGAGGAAGATTATTACACCTGGATAGGGAAAGAGAGTCTTTAAATAAAGAAATGAGTGTCTAAAAGAAAGTGTTTTCCATTAGTGGTTCTCAAACTGAGACGTTAATGAGCTTGCAGGTGGCCTATGGGCTCATCTGCTACAGAAATATTGTTTGTAATCTGTTGGTGATGACACTTCACATACATTTGTATTTTACTTAGAGTTTTCCCTGTTTTGGCAAAAAAGTGCCATTAATCTCAGTCAATGCTGACGAGTTGTGTGTAGATTTTGGTTTGTCTATTTTTACAAAATTAAGTAGAAGCATGTGGACCATGAATCAAAAAAAAAGACTCAAGAAGGCCTGGTTTAAGGGACCTCTCTGGGACCTTACTGGCCCTGAAATCTTCATTCTTGACAACTACTTGTTGAGTATCTACTGTGAGGTGGCCAGGTATTGGCAATATAGAGATAAATAGTTTGAACTCTACAGCTTATATAAATATAAAGATTTTGATGCACATGATGGTGGTACAGAGCAGTAAGTGCAGGAATCTCGGGACGTGCTGGCAGTCAGCTTGTTTGTTCTTCCATCCTCCTCACTTACCTTCACCTGTGCGTGACTTTGGGTACATTTCAGCTGTGATGCCAAGTTACAATACTTAGCTGGCAGAGATTGTAAGGGTTGGAAGAGATAATGCCACCAATGCATGAAACACATAGCAAAGACCCAGTTATTAGCTATCGTCATTACTTCCTGGAAGGCTGCCCTGTCTGTTAATTTGTATCTGCCATCTGACCACCACCAGGTCCATTGAAGTGGCAAGTTCAGAGTGTGACCACATGCTGCCGGGCACTGGTGTGAAAATCAAGTTGTGTGTGTTTCTGTTTGTTTTCCTTTTTAG
Seq C2 exon
CAGGAGTGGTTGAAGATCCTTGTGTTGGGGTGGACTGTCCCAACCGAACCTGTGAGCTGGAAAATGGAGGGGAGCTGTGTGGCTGCATTGAACCCCCTCCCTATGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456:ENSBTAT00000047085:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=72.8)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development