DreINT0161863 @ danRer10
Intron Retention
Gene
ENSDARG00000059558 | tecta
Description
tectorin alpha [Source:ZFIN;Acc:ZDB-GENE-110411-120]
Coordinates
chr5:62503387-62504824:-
Coord C1 exon
chr5:62504544-62504824
Coord A exon
chr5:62503495-62504543
Coord C2 exon
chr5:62503387-62503494
Length
1049 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGG
5' ss Score
4.86
3' ss Seq
GTAACTGGACCTGTCTTTAGCAG
3' ss Score
2.29
Exon sequences
Seq C1 exon
CTGTGATGAGACCCAGTATGTTGCCCTGGCTCAATCCTGTGATAATACAGCAGTATCAGAGCTCCAGGGGGAGGACAACTGCCTGAAGCTTACCGATTTGAAAGGTTTCTTCCAGCCCTGCCACGGTCTGCTGGACCCTCATCCTTTTTACCAGTCATGCTACATGGACGGCTGCTACAACCACCGCAAGGCCCAGGTGTGCGGCTCTATGGCGGCCTACGCTGAGGCCTGCCGCTCTTTCGGCACTCTCACCACCAAGTGGATCACCCAGGAGAACTGCT
Seq A exon
GTAAGGGGACGCTGCCACCTACAGGACAACAGGGAGGGGTGTAGACTGTGAATGGCAGCAGGGCTCAACAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTATTGTAATTTAATTTAATTTAATTTAATAAATATTTATTTATTATATTTGTTTATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTAAATGGGTTCTCAGCTTCTTGAAAGTACCCTGAAAAAAATAATTATTGGATTTACAATTTTCTTTTGAAGGTAAAGGGTTGCAAACAATTTATTTGGGCTGAATTTAAACAAAGTTGAACGTTACTAAATTTAATTTAATATATACATTGCTTACAACAGTTTTGCAATATTCTTTGCTTTTAAGTGTACTTGAATTTCAGACATATGAATTCAAGGTCTGGAAAGTACTTAAAAACAACCACAGGTTCTTGAAAGTGCTTAAATTTATGTTTTTGTTCTAAAAACTGTATAAACAGATCACAAATTTTATGGTGCTCCTTTAATTAGCGCCATATACTGTCAGTGATTCTTCCCAGTGCAATGTAATGTGTCAAATCTTTCAGCCAGTGGTCACTGATAAACTAACAAATACTGTAGTGGTGTTGTAGTACAATCTATGATTTTGTATAGTCGTTTAAACTACAGTATTCGGCCATTTGTTTGTATTACTATAGTTGTTGTGTTACCATATTAACTATGGAATTACCGCAACATATACTTTAAGTACTTTACTATAGTATGGATCAAAAACATTACAGTATTTACAAGAGTACGATTACGACTGCCCATTCTTACAGTTTTGACAAAAAGTAAATATTTAATATGAAAAAGTACAAATGAAGGGATGGATATATGGAAACTTTGTGTGTGTTTGCATGTGTGTTTCTGTGTGCTAACTTTGTAACTGGACCTGTCTTTAG
Seq C2 exon
CAGAATGGATCTATGACCCCTGTGCAGGAGAGATCTGCTCTAACAACACATGTGAGCAGGAGAACGGAGAACTTTGTGGCTGCCCTGAACTTCCCAACAATGACATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059558:ENSDART00000149979:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=78.9)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACCCAGTATGTTGCCCT
R:
TTCTCCGTTCTCCTGCTCACA
Band lengths:
346-1395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]