GgaINT0138324 @ galGal3
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
NA
Coordinates
chr24:3568569-3569057:-
Coord C1 exon
chr24:3568762-3569057
Coord A exon
chr24:3568680-3568761
Coord C2 exon
chr24:3568569-3568679
Length
82 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
GTGCGTCTCGCGCTGTTTAGCAG
3' ss Score
4.47
Exon sequences
Seq C1 exon
GTCCGGTGCCCGCAGCTGCAACGAGCTGCAGTACTCCCAGTACGCCGCGTCCTGCGACAACGTCCAGATCCAGAAGCTGCAGAGTGACAGCTACTGCCTGAAGCTGACAGACATGAAGGGCTTCTTCCAGCCCTGCTACGGCCTCCTGGACCCTCTGCCCTTCTATGAGTCCTGCTTCCTGGACGGCTGCTACAACCGCAAGCAGGTGCAGCTGTGTGGCTCACTGGCCGCCTATGGTGAGGCGTGCCGTACTTTTGGCATCCTGGGCACCGAGTGGATTGAGAAGGAGAATTGCT
Seq A exon
GTAAGTGAGATGGGCTCCTGTGGGTCCTCAGAGTGCACTGGGCCCGGAGCACAAGGGTAAAGGTGCGTCTCGCGCTGTTTAG
Seq C2 exon
CAGGAGTGGTGGAGGACCCCTGTGCAGGCGCCGACTGCCCCAACCGGACCTGCGAGCTGGATGATGGCGGGGAGCTGTGTGGCTGCATTGAGCCCCCACCCTATGGCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000010677:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=75.0)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTACAACCGCAAGCAGG
R:
CATCATCCAGCTCGCAGGTC
Band lengths:
176-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]