MmuINT0158786 @ mm10
Intron Retention
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42340258-42343924:-
Coord C1 exon
chr9:42343629-42343924
Coord A exon
chr9:42340369-42343628
Coord C2 exon
chr9:42340258-42340368
Length
3260 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
3' ss Seq
TTCTGTGTTTTCCTTTTTAGCAG
3' ss Score
10.61
Exon sequences
Seq C1 exon
ACCTCTCGCCCCCAGCTGCAACGAGCTACAGTTCTCACAGTATGCAGCCACATGTGACAATGTGCACATCCAGGCCATGCAGGGTGACGGCTACTGCCTGAAACTCACCGACATGAAGGGCTTCTTCCAGCCCTGCTATGGGCTCCTTGATCCCCTCCCGTTCTACGAGTCCTGTTACCTGGATGGCTGCTACAACCACAAGAAGTTCCAGCTGTGTGGCTCCCTGGCTGCCTACGGGGAGGCCTGCCGCTCCTTCGGCATCCTTAGCACCGAGTGGATTGAGAAAGAGAATTGCT
Seq A exon
GTAAGAGAATTCTTTTATTTCTATGGGTACCGTGGGGGTAGCATTGTCTGATGTCAGGTCCACCCCATATTTACTTACCCACCTGCCCCATGGGGTGGAGGGGAGGGGGCTGTGAGTTGCCCCTGAGATTCAAAGAGGAGGCATTTCCAGAGGAGCCTGACCCACTTGTAGCCCCTATCCAGTGATGGAATCTGATGAGCTGATGATGAGGCTCTGGCTCTGGGAAGTACCCGTTTACTGACTTCATGGAAAGACTTAGTTAGCCTGGGACTCCTGGCTGTCGTTCTTCTCAACTCAGCTCCACCATGACGTCTATCCCAGAAAGGGAAACTGCAAATGGCAAGAGGAGCTGGATCTAGGTGGCTCCACCCGGCTTCAAAGGAAGCTGTGGGTGGATGTCTATAGGGTCCATACATTAAACCAGCTTCTAATTCATGCATTGTTTTCTGCAGTGAGAATGCATATAGTATTTCCATTATGTGACGTGTTTACCCTTTTACTGTGTCAGCTAAATAAGTGGAGTACATCTTAATGTGTACATACACATATAAGTGGGCACTATGTATATTTGTGCCCATTCAGTATGATAGTGTGACCAACACAGTATGTGTCTGTGGCCAGACAGACACTACCAACCCTGCGTGCATCTAAAAGCCAGTGTGTGTCCAGGACCATTCCCAAACCACATATACACACTGGTGGCCTATAGAGTAAATATGATTAAGTGTGGACGTACACTCAATTCAGAACCTGAACAGGATAAATGGTGTAGTTAATTCTAATATACATTTGGTAATTCCGGAAACTGTTAAGACAATTACTAGCCTGTTGGAAATCTGCTTGGGAACTAATATTTTACTCCACTGTGCTCATAAGAAACACATCTTAAATAATGTTAAAGTTAAGTGTTTGAACTTTTAAAATTTGTCTGGCTATGTCTGTATACACACACACACACACACACACACACACACACACACACAAGCTTTTCTGTCAGAGGCTATTTATACCTTGTGTGTCAAATTAGAAATGAATGTTTAGGTTTTGGGCTGGGCTCTCCCTGTGGGCCGTACACTGTTCACCGTTCCCGCTCTCTTTGACCATTGTCTATTGTATTAGCCATTGACTCCTTTTGCTGACTACGCTCTGTGTTCTTGTTTCTGTGCCACACAAGGAGCACACTGGGTGGGTAGCAAAAAGATCTTAAAAAAAAAACAGGAAGCCTGGGGCTGAAAAGATGGTTCCATGGTTAAGAGCACTGACTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAGCCACATGGTGGCTCACCACTATTTGTAATGGGATTTGATGCCCTCTTCTGGTGTGTCTGAAGATAGTGACAGTGTACTCACATATATTAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATCTTTTTTTAAGGAAGCCTTTTCAAAATAAATATATTTAATTGATGCCGATGGCTTATCTCATTCATCTCTCTAGAAATTGCAGCATGAGTCTGAGCCATTTCTGTACCCTCACCATGAACAATTAATTACACACTAGAAGTGCTTGACAGCCACATAGAACAAGGTGTGGGTAGTGAAGGCCTTATTTTAAAAATGATTTCTTTACTTTTATCTTATGTATAAGTATTTGTCTGTATATATGTATGTGCACCATGTGTGTGCCTGGTGTCGAAAGAGGACAGAAGAGTGAGTTGAATTCTCTCCAACTGGGGTTACAGATGGTTGTGAGCAATCATATGGGTGCTAAGAACCAAACCTGGTCCCCTGAAAGAGCAGCAAATGCCTGCAGCTGCGGAGCTATCTCTCCAGCCCCTGAGTTTTGTTATTAACCTTGTTTTGGTACGTGTCTGTGGTGAAATCACCCAGAAGTACATGTGCTTAGTAGTTTTAAAGTATCCAATGTCTTGTTATTAATTGCTACAACATATATATATGGTTGATCTTCTGACATTCTTTCTTGTAACTAACCTGTGTGACCTTTCTAAGCCCCAGAAAAACTCTCAAAGAAATCTTGGCTCATGACCAGCAAGTGTTTCTTTAGCAAAAAAGGCTACGGCATATTGAACAAAACTTCTTCTTCCTTGGATGGAAAAAGATGAATCATGTAAAAAAAAAAAAGAATATCTTAAAGCAGCAGTTCTCAAGCCGTGGGTCGCGACCCCTTTGTGGGGGTCACATATTAGATATTCTGCATATCAGATATTGACATTACGATTCATAATAGTAGCAAAAATGCAGTTATGAAATAATTTAATGGTGGGGGGGGTCATGACAATATGAGGAACTGTATTAAAAGGTTGCAGGGTTAGGAAGGTTGCAAATCAGTAAAAGGCAATGCTCTTGGTTAGTGAGTGTCCAATGGAGTGCTGAACCTCTTGCGGAAAGAGCCAGCCATCTGTTTCAGGAATAGTGTTCAGAGCAACACAGTGGTCATTTATGTCCTTGAAGCTGTCACATTAATTACCTCTATTCTTTTTTCCTTTCAGCAAAATGGTACTGTTGATTGAATTGGAGAATTATGTATAGTTGTTCATTTGCCTATTTTTATAATGTAAAGTAGATATTTATGGGAAAGGTGCATCATGAATCAAAATAAAAAGTCTCAATAGGAGGGGCCTTCTGAGATCTTAGGAGTCTTAAGTTTTTGTTATTAACAAATATTTGTAACCTGTAGCTAACAACTTAATTTTGTTATTAACAAGCATTGAGATGGCTGGGTGCTGGAAACAGAGAAACAAATTATTTGGATGTGGCTTTTCTATAAATACAGAAAATTCAAGTAACTATAATATATACAAAACATGTTAGATACAATATGGTGTGGTGGGTGTATTAACTGTGATGTGGTAGGATAGGTGCAGAAATTACAGAATTCCTTGGTAGAGAAGTCTATATTTTATTTCTACAACGCACCATCCTGGATGACCTTGGGTAAGTTTTAGCTGTGAAATTGGGGCTATGGTGCTCATCTTGGGAAGTGTTTGTGAGAGCCAATCATGCTAAATCATGCTAAAGCTATCTCAGTTAAAGCTCGAGGCATAGTGCAGAGCCATAGGAGACGGCCAATCATCACTACTTGTCATTATTTTTTAGAGGTCATCCTGTCTGTCAACTTGCAGGGGCCCACCTGACCATTCCCCAGTGAACTGTCAAATCGAGCGTAAGCCGATGCCTCTGTGTGTAGTGTGAAAATCAAATTGTGCGTTTCTGTGTTTTCCTTTTTAG
Seq C2 exon
CAGGAGTGGTTGAAGACCCTTGTGTGGGGGCGGATTGTCCCAACAGGACCTGCGAGCTGGACAACGGAGGAGAATTATGTGGCTGCATTGAGCCACCCCCCTATGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705:ENSMUST00000042190:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=75.0)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types