BtaINT0147349 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019645 | TFDP1
Description
Bos taurus transcription factor Dp-1 (TFDP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076029]
Coordinates
chr12:90746485-90748933:+
Coord C1 exon
chr12:90746485-90746591
Coord A exon
chr12:90746592-90748811
Coord C2 exon
chr12:90748812-90748933
Length
2220 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
ATTGTCTTTTTTGACTGTAGGTA
3' ss Score
9.22
Exon sequences
Seq C1 exon
GCGTGGTGTCCCTGGTTGCCGTCCACCCCTCCACAGTGAACTCTCTCGGGAAGCAGCTCCTGCCAAAGACCTTTGGACAGTCCAACGTCAACATCACTCAGCAAGTG
Seq A exon
GTAAGGCCAGGAGGCTTGCTGTCTGAGGCCACGGTCTCGGGTGCAGGGCCAGTGCCGGGCGCCCCCCGGCTCGGGGCTGCCTGCCCACGGCTTCCCAGCCGCTCCTGCCTCTGCTTTCGTGGGGTCTGCTGGGCAGTGCGAGCTCTCGGGTGAGCCGGCTGCTCCTTGGCCAGGGCCTGTTGCCTGCCCAGGACTCGAGGCTGGCATCCGGGCCAACCTCTCGTGGGTTTGGGGCTCTGCGGATGCGGGTTGTGGCTTTTCTGGCCTTCCTGGCTGATGGGAGGGGTCAGACTCCCGGGGCCTTGCCCAGTGCCCCCCAGGAGCCCCCACCAACTCCTGCCCGCAGGCTCGGCGGCCTCTTCCTGATGTGACCTGTGGCTGTGAGGGGCGGGGCGTTCGTGGCCCACCCGCGCCTGCAGCCTGGCCCCCGGCAGGTGTGTGACGGCCCCGACGCTCAGCCCCACTGTGACGCTGGCCATGTTGGCTCAGCAGCTTTGCTGCAACGCTCCAAGTCCATAGTACATGGAGCCTGGGCCTTCTGTAACATCACAGATACTCAATAAATGTCTTTCTGACGGAAGTTACAATTCACATCATTTTATCTTATAGGTACTGTGTGTTGTGTTATAGCAGAGTCACGGCCGAGAGTGGTTCGGTGAGCGTAGCAACAGTCCTGTTGCTGTTTGCAGTTTAAATAGTGGGGAGCAGGAGTGACACGGAGATTTCTGTCGGTGTCCCAACCTTCAGCCCCCAGCGGACGCTCCCCTGCGGCTTCCTAGAGCTGGCTCAGGCCGAGCTAGTCAGGCGGCGCGATCTTCCCCGCGCCCTGGTGCCTCTCCAGCTGCGCACAGAGGCTGAGCGCAGAGAGCTGGGGGTTCTCACAGGAGGTCGGTCGGTGGAGAGCCATGGAAATCGGGGTGTGAGGGCGGACTGAGCACCTGCAGGGCCCTCTGTGAGGCTGAAGTACCGCCTGCGGGCATGGGTGCCCTGCCCACCCCCGTGTCCTGTGTGGTCCAGGAAGGCCATCTTGGGGACAGACAGCCAGTGGGCACCTGCTCTCCCTGCGCAGCAGCTGTGGCTGAGAGGGGTGTTCTCCGGGTGGGCGGGGAGCAGGCGCTATCGGGGGGCAGGGACCGAGGTGGGGGGTCAGCTGCAGCCTGGCCGCAGGTGGGGCTGCCGTCCCGAGCCTACTCTCCTGAGCGCTGGAGGGACGGCTCGCGAGGAGATAAGCCGTGAGCTGGGGCCCCCTCGCACTCACTCGCGAGGCCTCGGCTCTGGGGGTTCTCGCCTTCCACCCTGGTCCAGTCTGGGACACGCGTGCCGTTTGATCGCTTTCCAGAACACGTGCCGTTTGCCTTCGTGTCTCTTGAATGAGAGTGAAACACTGGTGGCGCTTTGGTCACTGGGAACGTGGGTTAAGAGACGAATTCAGCTGAGCCGTTCCCGTCCGTGGTTTGTGGATCGTTGATATTCATAGGTGACCTGGGCTTAGGGATAATTTGCAAAGTGCCAGGTCAGCTGTGTCAGGGCTGTGGCAGTAGCCCTTATCCTGCTAAGCAGTGGACTAGTGGGAGCATCCAGCTTAAAATAGCACAGACGTGCCCGCTCTCCACCCCCAGCGCCGGGGGCCTGGGGCTCCCATGCCGGTCCCCGGGAAGCGCTGCTTCTGAGTGGTTTCCCGGCTCAGGCACGAGTCTCTGGGAAGCTGAGCTCCTACCTGGCTGGATGAGGCAGTGTGTGCATGCCCCGTGAACATGGGGCCACGGGTCAGGGCTTCTGGGCCAGATGTCTGTGCCCGAGCAGTGGGCGCCTGCCTCCACCCCAGTGGCACTGCCCCCAGCCCCCACCATGCGCTGGCCGGGGTGCCCAGGGCTCCCTGTGTGGGTGGGCGGGCGCTGGGGTCACCGCAGTGAACCCCACTGGCCCTGGGTTCTTTTCCTTTTCGTCTTCGGGGCTCGTTGCTGCCCCAGTGAAGCAGTCTCATCTCCGTCCGGGTCGCGGGGGAAGGCGGTGAAGTGTAGTGTGCGGGTCTCGGGGTCGTTTCCAGCTGCCCGTGTGCAGCAGGTGTGCGACGGCAGCCGGGGCTCCGGGGCTCTCGGACCCTCCTCCAGCCTCTGCTTAACGACACTCAGTGGCGGCTGTACGTAGCAGGAGGAGATGAGGCGGCAGCGTCGTGTGTGGGAGATTCTGACTGTTCTGAATTGTCTTTTTTGACTGTAG
Seq C2 exon
GTAATTGGTACGCCTCAGAGACCTGCAGCGCCAAACACTATCGTGGTGGGAAGCCCACACACCCCTAACACTCACTTTGTCTCCCAGAACCAGCCTTCAGACCCCTCACCTTGGTCTGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019645:ENSBTAT00000026175:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development