MmuINT1032991 @ mm10
Intron Retention
Gene
ENSMUSG00000038482 | Tfdp1
Description
transcription factor Dp 1 [Source:MGI Symbol;Acc:MGI:101934]
Coordinates
chr8:13365089-13369580:+
Coord C1 exon
chr8:13365089-13365195
Coord A exon
chr8:13365196-13369458
Coord C2 exon
chr8:13369459-13369580
Length
4263 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GAATTCTCTTTTGACTGTAGGTG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTGTGGTATCTCTTGTAGCCGTCCACCCGTCCACAGTCAACACACTTGGGAAGCAGCTTTTGCCAAAAACCTTCGGACAGTCCAATGTCAATATCACACAGCAAGTG
Seq A exon
GTAAGTGGTAAGAAGCGTGAGTGTCAGGTCTGTGGATGGGCTGGGTGTGGGCCATGCTGCTGTGGACCATGCTGGGGCCACCGCGTGGTGAGTGTAGGAGGCTCCTTGTAGGAGTGACTTTCTTCTCAGGGTGCATCTGATTTCTGACAATGTGCACTGCTTTCGTTGCACACAGTGTGCAGTCTTACTGTCTCCAGTGTGCTTTCTATGTCGGAGTGTCTGAGGCCCCTGTACACATGGCCTGAGCACTGTCCTGCTCCATGGCTTCAGTTGCCAGCTCTGTGCCCTTTCTCCATCGAATAATGCATCAAAGATGAGGCGCTCCCATAGAGCCCCCCTCAGTGTGCCTGCAGTGGACTTACCTGTAACTGGGGCTTCAGCCAGTGGTGTTTTAACACAGCTACCTAGTAGTGGATGGATTCTTGTCTTTCATCCAGGGACTTTGTCCTGGGCTTCCCTCCCCCAGCCTTGGCTGGGTAAATGCTCTAGCTTCTCCTGGGAAGCTACCTTGCCCACGTGCTGCCTTCTCCACAGTGTCTGTCACCCGCCAGTCTTGTGTCTTCTGAGGATGGATGGCCTGACAACCCTCAAATAATCATTGGGCCTTAGGACTCTGTAGCTTAACATTTTTTAGAATATATTTTATTTTTGTTCTGTTTTTACATATTAAGTGGACACTCATGTGGAGGTCAGAGGACAACTTGCAGGAGTTTCTTTTCCTCCGTCATGTGTGTTCTGGGGAACAGACTTGGTGGTTAGGCGTCGTGACAATTGCCTTTATCACCAAACCCCTCTGCAGCATTTCACAGGTGTCCCTAGCTATCCCTCCAGTCCCTCTCAGTCTCACAGGCATCGGCAGGTGTTCCTAGATGTCTCTTATCCCTAAACAGAATTCTTGGCTGTGCTTTTTGCCCCTGTTGTTGGGGCATCTCTGCAATGCAGTCAGGCTTTGTATAGGGAAAGCAGTCATACCGAATCGCTAGTGTTCCGGTCGTCCCCTGCACCAGCTTTGGCTGTGGTGTGCACATTCACTGCCTCCTCTTGTCAGTGGATTCTGGGCATTGGGGGTTTTCTTTCTATGTTTGAGTGTTGTGCTGCATTGTCTATGTGGACTGCATGTATGCCAGCATCATCTCTCCTGGAACTGGAGTTGTAGGTGCTTGTGAGTCGCCACGTGGGCACTGAAAAGTAAACCTGGGTCCTCGGCAAGCATAGCAAGTGCTCTTAGCCACGGAGCTGGCTGTCAGGTCCCTCATGGCGGTGGTATTTGTGAGGTGAGGTGTCCTGTGCCACTGGCTGGCTGGAAAACCATTTTGTGTAGAACAGGCTGGTCTTGACTTCCTGGAGATTCGTTTCCTCCTTTCTCCTCCTGAGTGCCAGGATTAAGGGTATGTGGCATACTCCTAGGCTGTATCCTCAGCCGGGCATGTTCCAAGTGACCCCTAAACTGTTTGAGGAGATGGCTGGGTTGGCTCTAACATAGGAGGTGATAGTTAAACCTTATGTGCATGCGAAGTGTGATGGGGGCAGGTGCTGTGTCCCTGGCACTTGCTCACCAGAGGCTATTAAGAGTGTCTAGGTATTGGAAGCTTTGACACAGAGATGGCTCTGTTAACACAGAGGTGCCTGCCTTGCTGGTTTGCACTCTGGGCCCTGCCTGTAGCTTCATGGTAAAGCCTACCTAACCTTCCCTGAACCTTTCTAAATTTGTAGTTTGCTTTTGTGTTTAAATTTTTTATTTTGTATGTAACTAGTAGAATCACGCAGTGTATAATACTGAACAGCTTTTATCTGAAATTAAGGTGCAAAATGAATCCTTAGGGTGTTTTGAGGGGAGAGTGTTTTGGAAGACCTTGTGGTCTGGGTACTGGGTGTGGCTTGTTGGCCGAAGGCTTGTCTAGAGTGTGGGAGACTGTGTGTTCTATAGCAAGGCAAAGACGCATCAACAGGACTCCCATATTGGCTTGAAAGCTAGAAGGGGGCTCTAAGTGATGTCAGTCCTCAGTATGTGCCAGTTAGCAGTCATGTGGCTTGCTGGAACTTTGGGTCTGGAAGACTGGGTTTGAACCAGTCTCAGTCCCAGCAGTAGTGACATAGGAAAGACTGCTTGTGACCAGGCTTCCTCTTGTCCTGAGGAGTAGCAACCAGAGAACCCTAACCGAAGTAGCTCTTTGGTATCTGAAAGGCCAGTGTCCCTGGGGGCTTCTGCATGCTGTATTCACATGTGTGATGGTGGAATGTGAGCACACCAAGGGGAATGTGGCCCTTTTCCCAGTGTCAGGGTGCAGATGGAATGGGACCCACTTCCGGCCAGCATGGCTGTGCTCCCCAGGGCTTTGTCTGCAGCCTTTGGATCTGGCCGTGCCAGCATGGAGCTGCTACTTTACAACCTGGTTTTCCTCTGTCTCCTTGAGGCCTGGGCACCTGGCCTCCTGGATGTGCCTTTTCCTCTTCTCCCCATCTCACTTGCTGATATTTCCTTGGTCTGTTTTTCATTTTCCCATCTGTGTGTGCACACGGAGGGTGGAGCATGCATAGGCAGCCATGGGTACACAGGGCTGAGCATTTGCCAATCATGCTGTGCATGAAGGTGGGGCCTAAATGTATGGCGACGGCGACTGGGACATTTGATGCCAAAGGTAGATAGCTCCTATATGCATAGTTTTCCTTCTATTGTCAGATCCACAGAGAAGATGTGTGTACCTGAGGGTTGGGGAGCTCACTCTGCACTGTCCCTCAGATGTGCACAGGGTCTCTGTGTGTCCTGATGGATGTAGATCTCAGTGAGTAATGAGGCTGCCTGTCAGGGGGCCACCTGACCCTCCTTGGCACAGCATATCAAGAAGTGCTGTATGGAAGAGTTGAATCTGGGAGTAAGTTAGCTTTCTTCAGATTCAGTCATTTGGCAGCGTCCGTGCGGCCAGTGGGTAAGCCAGGCACAGTGCCCTCCTGCACACGCACAGCCGCAGGCTGCTGGCAGGTGCTCCCAGGCCAGTCTTGAGTCTAGCACAGCTGTGCATCTTCTCAGGGGTGGTTGTTTTGGTGCTGCGGAATAGACTGAGGTCTCCCGTGAGCTCCAGAACTTTTGCGCAGCCTTCATGCTGGTGTGGGATGTGTCAACGTGACTGGCAGGCAGTACTGGTGGGGGACGTAAAGCTCTTACTGTCTGGGGATGGGGAGGGATCCCCTGTTCCCGCCTGAGAGAGTAAGCCAAGATGCACTTCCCGTCTTGTGTGGCCTAGTGCTCCCAAAGTGTACCCACACCTTCACTGGATCCAGGTATCTCAATTCAGTTCCTGTGGGGATATCCCCAGAAGAATTTGATCACTGAAGTGCTCTGTACTTTGGGATTTACCAGAGGTCTTTTTGACTTAGAGTTATGTGTGTAGTAAGATTTTTGACATTGAGACATTGGTTGTCAGAATAGGACAGTTGTCTGTCTCCAGAATAACAGGTTTGTGTGTTAACTGAGGGAACTAAAACAGCAGACCTCTTCCCAAAGGACATCAAAAACATTGCTATAAGAGTGGTCGCCACATCAACTCTGGTAAAACTGGTTACCTGATTCCCAAGAGCCACCACCTCTGGTCAGGTGAGCTGCTGGCTGTGTGCTCCCAATGGGGTTGCCTGTCCCTTTCTTGTCCTGATGATGTTTGGATCCTGAGGTCCCTCATAGACAGTAGAAAAAGGTGTCCCCGGCAGGACAGTCAGGCACCACTCCCACTTGGGAGCTGGAAGAGGTACCTGTTGTCTGTCCTAGGGTTACAGTTCTGGAAGTCTGTCTGTCTGTCTTCTTTCTTTCTTTTGTCCGTCCTTCCTTCCTTCCATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTCCTTCCCTTCTGGTAACTTTTATACTTTATAGGGGCAGTTTTATCCTTGCCTAGCTCATTAAGAGGAAATAAACCAGCAATGTGTTACTGTCCTGTGATTAATCCTAGCTATCAGTAAGTTGCCTCCTTGTCACTATCGGTGTTCTTGCTGTGGGAGGCCTGCCTTGTCCTTTCCAGCCCCTAACTGTGGCCTGCTCTGTCTTCTTGAGCCTGCCTACCTGTTTGAGACGTTGATGTTCTTTTAGATGTACGGGTGTCTGAGCTGTGTGGGGTAGTGCCACAGCAGAGCAGCGTGCTTCTCTGTTGCTCTCTCACTGTGGCTGACAAGGCAGAAGGAAGCGGTGGTACTGTGATGGAGACACGTCTGATTGTTCTGAATTCTCTTTTGACTGTAG
Seq C2 exon
GTGATTGGCACGCCTCAGAGACCGGCAGCATCCAACACTATTGTGGTAGGAAGCCCACACACTCCCAACACGCATTTTGTGTCACAGAACCAGACGTCTGACTCCTCACCTTGGTCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038482:ENSMUST00000209885:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.926
Domain overlap (PFAM):
C1:
PF059717=Methyltransf_10=FE(46.1=100)
A:
NA
C2:
PF059717=Methyltransf_10=PD(18.4=34.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types