RnoINT0150092 @ rn6
Intron Retention
Gene
ENSRNOG00000019222 | Tfdp1
Description
transcription factor Dp-1 [Source:RGD Symbol;Acc:1560344]
Coordinates
chr16:81113894-81119003:+
Coord C1 exon
chr16:81113894-81114000
Coord A exon
chr16:81114001-81118881
Coord C2 exon
chr16:81118882-81119003
Length
4881 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GTGACTTCTCTTTTGATCAGGTG
3' ss Score
8.34
Exon sequences
Seq C1 exon
GTGTGGTGTCTCTTGTGGCTGTGCACCCATCCACAGTGAACACACTGGGGAAGCAGCTTTTGCCAAAAACCTTCGGACAGTCCAATGTCAATATCACACAGCAAGTG
Seq A exon
GTAAGTGGTGAGAGGCGTGAGCCTCAGGTCTGAGGATGAGCTGGGTGTGGGCGATGCTGGGCACCTCGTTGGTGAGTGGGTAGAGGAGGCTGCTGTAGCAGTGACTTTGCTCTCGGTGCATTCTGACACCTGAACGTGAGCTCTGCTTTCTGTACACACGGAGTTCAGGCTTACTGTCTTCAGTGCACGCCATGTCAGGGAGGAGTGTCTGAGATCTGTACACATGGCAGAAACCTGGTGCATGAAGGTGGACAGACCAAGGCCTGGGCAACTGTCCTGCTCCATGGCTTCCATTTCCAGAGTTCTGTGTTAAAACCAGCTCTGTGTCCTTTCTCTACAGCCACTGTCTCCTGGCTGTGTAGGGTTGGAGGAAGGGTGCGGCTATGTAGCTATGGCCACAGGAAGGGGCCAGCACTGTGCCCTTTCTTCATCGAGTAATGGATCAAAGATGAGAGGCTCCAGTGGGGCCTTGCAGCCTCCCTCCATGTGGCCGCAGTGGCTGCCTGGAGCTGGGGCTTCAGTTGGTGGTGGTTGGCACAGCTGCCTAGTAATGGGCAGATCCTTGTGTGTCTTCAGGGACTTTCTTCTGGGCTTCCCTCCTCTTAGCCTCTAGATGTCATGGCTTCTCCTGGGAAGGAAGCCGAGGCTTAGTGACATGTCTGCCTCCTTGCCCACATGCTGCCTTTTCCACAGTGTTTTACATCCACCCGCCTCGCGTCTCCTGAGGACGGCCTGACAGCCCTCAAGTAATCGTGGGGCCTTAGGACTCTGGCATGACATTTTTTAAAATACATTCTGCTTTCTTGTGTTTTTATGTTAAGTGAGCACTTGTGTGGAGTCAGAGGACAGCTTGCAGGGGCTTCTTCCCTCCATCACGTGTGTTCTGGGGAACAGACGGACTCAGTGGTCAGGCTTCATGACAGGTGGCTTTATGACACCCCTCTGCAGCATTTCAGGGTCCCTAGCTGTCCCTCCTGTCTGCCTGGGTCTCCGCAGGCATTACCAGGTGTTCCTAGATGTCTTATCCCCAAAGAGAGCGCGAAGCTCTGCTTTTCCCCGTTGTTGGGGCATCTCTACAGTGCAGTCGGGCTTTCTACAGAGAGAGTGGTCATATGTCCCCCGTGTTCCGATCGTCCCGTGCGCCAGCTTTGGTTGTGGTGTACAGCATTCACATTCACTGCCTCCTCTTGTTAGTGGATTCTGGGCATTGTGGTTTTTCTGTTTTTAATTTTTTACATTTAAATTTTTCTATGTCTGAGTGATATACCCACGTTGTATATGTGTACTGCACGTGTACTGGGTCCTCTTGGAGTTGAGAAGAGGGCATCATATCTCCTGGAGCTGGAGTTGTAGGTGCTTGTGAGTCACCATGTGGGTATTGAAAATCAAACAAGGGTCCTTGGCAAGCATAACAAGTGCTCTTAACCACGGAGCCATCTTTCAAGGCCTTCATGATGTTTGTTTAAGATGAGGTGTCTCATACCACTGGCTGGCTAGTCTTGAATTCCTAGAGATGCATTTCCTGCCGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCTCCTCCTCTTCTTCTTCCTCTTCCTCTTCTTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTAAGTGCCAGGATTGAGGGTGTGTGTCACCATACCTTTCCAGCATTGGGGTTTTAAGTATCGTGGCTGTGGGGAATGCTCTGGGTTCTAAGGACCCTGCAATCCTATGAGGTGGACCTGGGCTCTGCTAGGCTAATTGAGAAGAAACTCCTTACTGCATTGAGAGTTTGAACAAGTTGTCTTTGCAAAATTTGTGCCTCAGTGGGTGGGGAGAAAGTTGATAAGAAGTGATTTAAACTTTATTGATCTGAAAGTCAGCATCTGTGGAGCTGAACTTGGCTGGAGAAGTGGCTGGTTACTGTGTGTGCTTTGCACTATAGTGGTGGGTAGGGCTTGCGTGCTGCCAGCATTTCCTTGTTTATTTTGTGGTGGTACTAAGATTAAACATGAGACTCATGCGTTAGAGGCGAGCAGCATACTCCTAAGCTGTGTCCTCGGCCTGGCATGTTCCGGGTGACCCCTAAACTGTCTTATATCTCCAAGGTGTGAGGAGATGGCTGGATTGACTAGCATGGGAGATGATAGTTCAGTCTTATGTGCATGCGAATGTGACCTGGGCAGGTGTGGTGTCCCTGGCACTTGCTCACCAGAGGCTAAAAGCTCTTGGACTAGGATATAGGAGGGTCTAGTTGTATAGTATTGGAAGCTTTGACACAGATGTCTCAAGCACAGAGGTGTCTGCCTTGCTGATTTGCAGTGCGTGGGGCCTGCCTGAAGCTTGATGATAAAGCCTTCCTAACCTCTGTTAAGCTGCACTTTGCTTTTGTCTTAAGTTTTTATTTTGTATGTAACTAGAATCGTGCAGTGATACAAGACGGGACAGCTTTTATCACTTGAGATTGAGGTGCAGAATGAATCCTGAGGGTGGCTTGAGAGGAGAGTTTTGGAAGACCTCTGGGTGTGGCTTGCTGGCGGATGCATGTGGGAGACCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCATGCGATCCTCAGCATTGCGAAAGCATCAAAGGACTCCTAGATTTGTTTGAAAACTAGAGAGGGGCTCTGGGTGAGGTAGGTCTTAGTCCTCTGAAATCCAATGCTGGCTTCACTTGGATTTCCCAGTTGTGTGGTGTTCAGTCCTCGGCATATGCCAATCAGCAGAGTCATGTGTCTTGCTGGAGCTTTGGGTCTAGAAGACTGGGTTTGAACCAGTCTCAGTCACAGCAGTAGTGACCATAGGAGAGACTGCTTGTGACCTGGCCTCCCCTTTCTTTCTCCATGTGAAGTAAGGATTGTTATGAGTGATAGCAACCAGAGAACCTTAACAGGAGTGGCTCCGTGGTATGTGGAGGGCCAGTGTCCCTGGGAGCTTCTCCATGCTGCATATACGTGTATGCAGACGGTGAACATGAGCACACCAAGGACAATGTGGTCCTTTCCCCAGTGTCAGGGTGCAGGTGGAATGGGATGTACCTCCTGCCAGCATGGCCGTGCGCCCAGTGGCTTGTCTGCAGTGTTTGTATCTGGCCATGCCAGCAGGGAGTTGTTGCTTCACAGCCCAGTTCTCCTCTGTCCCCTTGAGGCCTTTTCCTCTTCTCCCCATCCCACTTGCTGATATTTCCTTGGTCTGTTTCGCGTTTTCTTTTCTTGACTCCATGGCCTCCCACTTCTGCAGTTGAACTTTCCTCTGAGCCTGTTCCCGTCAGCATGTGCACACAGAACCACAGCTTATTCTAAGCAGTGTGTGCACATGGAGGGTGGAGCATGTGCAGAGAGCCATGGGTACAGCGTCGCGTTTGCTAACCATGCTGTGTGTGAAGGGGGGGCATAAATGTATGGAGGCCGGGACCTTCGATGCCAAAGGTAGACAGCTTCTATATGCTTGGCATAGCATTTCAGACGTGCTGTGTGGAAGAGTGGAAGCTGGGAGTCAGTTGGTTTTCTTCAGACCCGGCCATTTGGTAACTTCCTTGTGGTCAGTGGGTAAGGCAGCACAAGTGCCCTCCTGCGCACAGAGCTGCAGGACAGGACGCAGGTGGATGTTCCCAGGCTGTTGTTGAGTCTTGCTGTGCGTCTTCTCAGGGGTGGTTGTTTGCGTGCTGCAGAGTAGACCGACGCCTCCCGTGAGCTCCAGAACCTTTTGCACAGCCCATGCCAGTGTGGGTGAACATGACTGGCAAGCAGTACCGGTGGCAGGATGGAAAGCTCTTGTTGTCTGTGGGGATGGGGAGGGGTCCCCTGTTCCCACCTGAGAGAGTAAGCCAAGATGCACTTCCCTTCTTGTGTGGCCACGGGATACTGTGGATCCAGGTGGGGATGTCCCCATAAGAATTTGATCACTGAAGTGCGTTGTGGTTTGGGATTTACCAGAGGTCTTTTTGACTCAGAATTATGTATGTAGCAAGATTTTTGACATTGAGACATTTGTTGTCAGATCAGGACAGTGTCTGTCTCCAGAAGAACGGTTTGTGTGTTAACTGAGGGAACCAAAACATCAGACTTCTTCCCAAAGGACATGAGACATTGCTGTGAGAGCGGTCGCCACATCACTCTGGGGTAGACCACTAACTCTGGTCAGGTGGGCTGATGGCTGTGTGCTCCCAGCAGAGCTTCCTGTCCCTTTCTTGTCCTGATGATCTTTGGATCCTGGGGTCCCTCAGAGACAGTAGAAAAGGTAGGACAGTTAAGCAAACACCATTTCCACTTGGACAGAGGGTGGAAGAGGTACCTGCTGTCTGTCCCAGGGTTACATTTGTTTGAGAACCCCCCCCCCATCCCCAATAACTTTCATAGCTCATTAAGAGGAAATAAACCAGAAATGCGTTAATATCCTGTTCTTAGTCCTAGCTGTCAGTAAGCTGCCTGCTTGCTGTGGGCACTACTCAGTGTTCTTTGCCATGGGAGCCCTGCCTTGTCCTTTCTAGCCCCTACACTGTGGCCTGCTGTCCTCTCAGACTTGCCCATCTGGCTGAGGCTTCGATGCTCTTAGGTGTACAAGTGCCTGAGCTGCTTGAAGCAGTGCCACATGCAGAGCAGCCGCAGTGACACTGGCCCTGCTCTCGCCATGCTGCCTTGGGCGCCTGCTTCTCTGCTGCTCTCTCACTGCGGCCGGCAGGTGCGGTGCGGCACGGTGTGCAGTGGCTGCAGAAGGAAGCAGTGGCACGCACGGGTAGTCCTGTGAGTGAGACATGTCTGACTGTTGTGACTTCTCTTTTGATCAG
Seq C2 exon
GTGATTGGCACGCCTCAGAGACCTGCAGCAGCCAACACTATTGTGGTAGGAAGCCCACACACTCCCAACACTCACTTTGTGTCCCAGAACCAGACGTCTGACTCCTCACCTTGGTCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019222:ENSRNOT00000026150:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.486
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]