GgaINT0108362 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3E8]
Coordinates
chr1:136656142-136660756:-
Coord C1 exon
chr1:136660650-136660756
Coord A exon
chr1:136656264-136660649
Coord C2 exon
chr1:136656142-136656263
Length
4386 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
GATTTTTATCTTTGTCGTAGGTT
3' ss Score
8.48
Exon sequences
Seq C1 exon
GAGTTGTTTCTCTATTGGCTGTTCATCCCTCTACAGTAAATACACTCGGAAAACAGCTCCTGCCAAAAACATTTGGACGGTCTAATGTCAACATTGCACAACAAGTG
Seq A exon
GTAAGGAGATGTGTTGGGTTTTTTTTTTTACTTACATGCTGTAAATCTGAGTTGTTGATTGATATTCAGTATCACTTGTCATGTGCAGATTGTCTAAATGTTTCTAGTTTTAATAGACTCACTAAATTAGAACAAATGTGCTTTTGCAGTAGGAAATGAGGAGATGACAGTCAAATCAACAGGCAGGTACCTGAATATTCAGATTGCTTTCTTTTTTGTTAGTGTTGCCAGTTTCTAATCAGTGGCTCTTTCACATGTTGGTTTGAAATCTGTCGTAGAGACATGTAAATGAATTATTCTAGCATGTTTTTACTGAGTTTGAAGACAAGTGGAACAAAATTGAAAGCAATTCTGAAGTATTCTTTTGCTTTAACTTTTACTGTTTTGTGTGAGGTGTGTGAAATGAGGAATGAGGGAATCTAATAATGCAGTTGATAATACACAGGTTATAAGAAGCCACTTCTGTAGTGATCCAAATTAAAATGTGGTGATCTGAAAAGAATTGGTCTCAATTCATCTTGTGGAAAGCAACTGTAATGTGTAAACACCTGAAAATTAATTTGTCTTACATGTGAGTTTCTTCTTGATGCAAAAACAGCTTACCATCTCCTCTTCCCAACACTTAAGCTCTAAGGAGCAAGGCTGCCTAAATCAATAAACTGTACCATTTCAGCTGTACAGCTGTTGTGGAAAATCTAGTCCCTCTTCATTATCTTTATAACTGCTTATTAACGGTACTTTGAAATTCTTACCGTGCTCTGGTGTAACTGTCAGTTTGAGGAGCACAGTGAGGGAGGAGAGCAAAACCAAAACTAACAACAACAAAAAAAAGCAAAATAACAAGAAACCCACAAACCTCTACGCTCTCCTGTGTTCCTAATTGAACTGCAATATCTACGTTCAAGTCCTGAGCTTCACGTAGTTTGAAGAGTCCCATGTGAGGCAGACTAAAGATTGTTGAGTAATGAAGTGTCAGTGAAACTGGAGATTATTCATTGCATGCATTTCCAGTGGCAATGGTGAATTCACTGCCTCCAGCAATTGCTTGAAAGGTAGAGTTTATTAAAATGAGTTTAACTGAATTTACCTCTTCAGTAGGAGATACTTTATCAATAAATATCCAAGTGTAGATTTGTTAGATGTTCTTTTAACTTAAATTCAGCAACTAGCAGTGGGAAGAGAATGTTTTTTTCTATAGATCACAGTGGCTTGTAGTTTCTCTTCTGGGCATTACTGTGAGGCTGTGTACATACTTGAGTCGAAAATGAAGTGTTCTGTTTGGTAACTTACACAACTTCTCCTTAAGATATCAAAACCAAGGTTTGATAAGGAAATGACAAACTATCTGATGCCTTTTTAAACTTTGAAGGTTGAGTAAATAAATGTTTACAGCCCTGTGTGTGTGCGTATGCACAAATTATCCATCTGTAAATTGTTGTCTTCATGGTTGGACTGGGTGGTCCTTTCCCAACCTTGGTGATTCTGTGATCGCACGTTTCAATTGACAAATGCTCGTGTACTTTCAGTCTTGCATGGTAACATGAAATTGCTTCTCTTAATGGTGTCTTTCTTAGTATGATCACTGTGTGAAATTCACACTTGCAATGAAGAATTTGTCAGCGTTTTAGGTCTTATTCTAAACATTTTTGGTAAGAACAAAGGTGGCCCATATCAGAGCAAATTTGTATTGACTCTTAGCAGTACAAAATGAGATGTTTAGTTTTATGTTGGCAAAGAAGAGATGGAGTTCTTGTTCGATGTGTATATCAAGAGAAATTTACACTGGCCTTATGATTCAGAGTGATAGCAAGATAGCAAGAAATAGCTAGAATCCTGAAAACTGGGGAGATAATATTTTTTTATTATTATTATTTTATTTTATTTTATTTTATTTTGCCAATAAGCAAGATATTCTTGGGAAACAAGAATTGAGGATTTTCCTTCTGACCCTACTCAACTGTCTAACCTTTGGCTGGTAAAACCAGGTTTTCAATACTTAAATACTTAATTTTCTGAGCTTGTGCTCTTATTCAGTTGGTATTATTTATTTTTTCTCAGGAGAAAAATGTTGATGGTGACAGCACTGCTGCAGTACAGTGAAGTGGATTGTGAAGACTGTCACACTGTTCTTTTCCATTTTCTCGATGTTACTTTTCTTAAGGAACTGAATTTTAATCTTGTTCTTTGTAGCTCTAAAAACATTTAAGAGATGTAGAGAAACAGTGGATTTCTACTTTGACCTCATTCTTTGCCTCTTCCCTCCCTGTTTTCCCTAAAATTCCATCCATATCTGTTCTATTATCCTCTATGATTCCATCCATAAGCTTTCATTTTAGGATGTTCCCAGTGTCCCAGTGACTTCATTCTACTGAACTGTTAGTGTTATTTTAATGCAAAGTCATGATCATCTGTGAACTTGGGAGTAAAACGTAGGGCTGTCAGCATTTCTTTTGAGGAGACAATAAGAATACCAAATAATTCTTAGACATATCTGAAACTCCAGGCTGTAGGGTCGTCCTTAATTATCAGTCCATACTTACTTAGCTTTGAATAAGACACTTGATATTGACATCCTCTTTGTTCAAGATTCTTCACATGGTTACAAGTAGAGGCTTACAAGTTATTTCTGGAATTCTGGAGTATTTCTGCATTTCATGTCCTTGAAATACTGAAAAGAAAATCTTGGATATTTGGAAACAGTGTAATACAGGTACTGATAAACGGCCTTGGAACTGAAAGTACAAATTCTAACCCTCTGTGGCATTCATGTTTGAAAACTGGTAGAAATGCAACTTTCAGCAAAAGAAGATCACCGATCTTTTTTTGCTGGCAGTCACTGTGAGAGTAATTGGATTTCAGACAGTTATTTAAAAAGAAAAGCAAGTAACCCAACATTGAAGTTCATTTTTGCCTGTAGGATTTATCTATTCCTCTATATTCTGTAGAGAAACAGAGTAGTCTTAACATATGATTCTTCATTATATGAAGTCTTCTCAATACTCAAGAGGAATGTTAGTCTTCTTAAGGATACCTACTGTATTTCTGAGTTTCTCTATCCCTCACATATATTATTTGCATAATACACGAACTTAGATCTGAGCCATACCCTTTATGTGAAAGCATGCGCTTTAAAAATATATATCATAAAAGCATATTATTCTGGCTAGTTTGCAGACTTCTGTGAGATAAGAGAGGGAATGCTGAGCAGCTTTGAATTTGCCAAACAGACTTAGAGTTTTCCACTGTAGCCTGTGGGGTTATCCATCCATCCATTTACTTCGTACTGCTGAATGTTTAACAGTAGTACTGAGCACAGTAGATTTCCAGCATTTACTGCTGCCAACTGATTGGTTTTTCTCTGACCCTTGTAATTCTGCTCCCTCCCCTGTGCTGGCTCGGCCCCTCATCCTACTGCACAATCTTAGGAATTCTAGATGTGGCATCAGGGTGGTGGTGGGACTGTTTGTGGAATTGGGAAGCCAGGGCATAGAGGGGACCCTCTAATTTTGACCTCTTCAAGCAAGCTGTTAAGTAATCTCTTCCAGTCCCCTGTGACTGCATCCTAAGAAACAGAGATTGGCTACTAGCTTTCCTCCATTCTCTTTATTGTCTGTGTTACGTGAATGGTGCACTGGTAGTCTTCCTGGCATTCTGAGATGTTGGTGAACCAGACTTGTTTTTTTTTTTATGAGATTTGTGAAAGGGTTGCTGTCAGAATCACAGCTGGGTAGCTGCAGGAATTCCAGTTATCTAAGGGCAAAAAACGAATAAGTGGGATCAGACATTTAAAACGTGCCTGGAAGATGCTTATTCCAGCTCTTCTTAAAAATGTTCTTTCAGAAATGGCCTAACATGAGGTTAAAATAGCTGCAGGATAGCTATAGTTTCTCAGTGAGTGAGAAAGATACACCTTTCTTTTTCTTCATTTCTAATGTATTCATATTTTGTTTTAACTCTGCAGTGAGAGTGACTGCCTGTAGGAGAGAATTCCTTGTAACTGCACTGTTTTCTCTCAGCTTTTACTGATTTTCAAACCTTGATCTGTACATTTATATTTTAACAGTAATTTACAGCAGCATCTTTAGATGTAGTCTGGCCGGGCTTTTTGTTTTGTCTGGCTTAGATTTTGTCTAAATGAGAGTTGAATAATTGTAAGAAATCCAGTAAGCATGAAAAACTCATATTGGAAGGATAAAATATAAATGATTATTGCCTAAGGAGTGATTTAACCATGTGATGTGTGGTCTGAAGGCGTTCGTGCTAGTGTGTCTAAGTTGAAAGCATCTGTTACAAGTGTGTAAAAATAATGTGTCCTGAATAATGCAGCATCTGATTGTTTTGGGATAGTTATGGTTATTTTCCAAATGATTTTTATCTTTGTCGTAG
Seq C2 exon
GTTATCGGTACACCTCAGAGACCTTCAGTGCCAAATACTATCCTGGTAGGAAGTCCACATACACCTAACACACATTTTGTATCACAAAACCAGACTGCAGATTCTTCGCCGTGGTCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823:ENSGALT00000027160:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.890
Domain overlap (PFAM):
C1:
PF059717=Methyltransf_10=FE(46.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]