BtaINT0147559 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018035 | TGFBR1
Description
Bos taurus transforming growth factor, beta receptor 1 (TGFBR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174621]
Coordinates
chr8:64605680-64614580:+
Coord C1 exon
chr8:64605680-64605910
Coord A exon
chr8:64605911-64614349
Coord C2 exon
chr8:64614350-64614580
Length
8439 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CTGTTTATTTTTATCCTTAGGTT
3' ss Score
11.74
Exon sequences
Seq C1 exon
GAAAGCCATCATCTGGCCTTGGTCCTGTTGAACTGGCAGCTGTCATTGCTGGACCAGTCTGCTTTGTCTGTATCTCACTCATGTTGATGGTCTATATTTGCCATAACCGCACTGTCATTCACCATCGAGTGCCAAATGAAGAGGATCCCTCGTTAGATCGCCCTTTTATTTCAGAGGGTACAACGTTAAAAGATTTAATTTACGACATGACAACATCAGGTTCTGGATCAG
Seq A exon
GTAATGTATTTCTTTCTTTTTCCTAAAATGTCTTTTTAAAATTAACTGTATTTATTAGTTGGCTAAGCCAGCTGGAGAATTTTGAGCATTACTTTACTAGTGTGTGAGATGAGTGCAATTGTGCAGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTGGGACTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGACTTGAAATAGCTCAACTGGAATTCCATCACCTCCACTAGCTTTGTTCATAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCTGGCTCTAGGTCAGTGATCACACCATCATAATTATCTTGGTCGTGAAGGTCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCACCTCTAATGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATCAAGCCCATCTTTGCATGAAATGTTCCCTTGGTATCTCTAATTTTCTTGAAGAGATCTCTAGTCTTTCCCATTCTGTTGTTTTCCTCTATTTCTTTGCACTGATCGCTGAGGAAGGCTTTCTTATCTCTTCTTGCTATTCTTTGGAACTCTGCATTCAGATGCTTATATCTTTCCTTTTCTCCCTTGCTTTTCACTTCTCTTCTTCTCATAGCTATTTGTAAGGCCTCCTCAGACAGCCATTTTTCTTTTTTGCGTTTCTTTTCCATGGGGATGGTCTTGATCCCTGCCTCTTGTACATTGTCACAAACCTCAGTCCATAGTTCATCAGGCGCTCTATCAGACCTAGATCCAACCAGTCCATTGTAAAGGAGATCAGCCCTGGGTGTTCTTCGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGATGATAGAGGATGAGATGGCTGGATGGCATCATCAACTTGATGGACATGAGTCTGAGTGAACTCCGGGAGTTGGTTATGGACAGGGAGGCCTGGCGTGCTGCAATTCATGGGGTCACAACGAGTCGGACACAACTGAGCGACTGAACTGAACTGAAGCCAGTTGGCTAAGTTTGTAAAAATTTGGGCTGGTGTGAATACTACCCCAGGTTTGAACCTTAATATAGGTCTTTAAGCTAGGTTTATATCTGACTGTGGCTAGTTTAGGAAGGACAAATTAGAAGTGACTGACTTGTCAACATTTCATCAGTAAGTCACTTTCACATTTGTGTAAATTTCAAAGCATTCTCACCTTCTCATGACTGTGTAAGATAAAAAGGATAAGGACAGTTATTCTTCTATAGCTGAGGCTGAAGTTCAGAGATGTTCAAATAATCTGCAGTTACCCATTCTCTTCAGGACTGTTTAGCAGCTTTATTATTATATTTGAAAGCAGGTATGACAGTGTATTTGAAATCGTGAAGGCTATTTGCTTTTTTAACATGAAATTGCTGTCTTTGGCTCAGGCCAGTTCTTGTTGTTTTTATTAAACTAATGAATTTTTTTGTCATTTTCTCCCTTAAGAAAATGCCTGATCACCTTTTTATTTAATACAGCTTTACGGATCCATGGCCCTTCTGATATTTGCTTTTCTCAGTTTGTTGATTTATGTGGGATCAGAAATAGATTACCCAATTGCCTGAAGCAAATTAACTTCAAATAAGGGCTAGATTAATGGATACAAAGATTTAAATATATATATGTAAAGAAAATTTCACAAATTATATATCAAGTGATTAAAGGAACTTTAAAGCAGAAATTATGACTAGGGTAAGCATATGGCTCTGAAGCATAAAATCACAGATACACAAAAAGTTCACATGATGAAAGATGCTTTATTTCAAGGGAATGAAGGTATATTTTAAGGGATGTATATGTATATATGTTCATTCATTTAAGTGTGAAGAAACTGATTTCATGACCTAAAGTTTTCTTCTATAGAATTTGACCGTAAATATTCCATGAGTTCTGTCCATGATTGCTAGGATGCATACAGGCTTACGAAGGAGCCCACATCTCTTAAGGCAGCCTTGTAGGGATTCCTGAGACTCCTATGAGGAGGGAGGCAATTAGAAGTTGGATTAGAAGGAGCAGCCTTAGTTCTGAAGATGTGACACTCTGGGCAGAAATGGTGGAGGAGTGGCGAGAGATTATTTTACAGCTTCCCTGGGGTTCCCCTTTGATTCTGAGTTAAAGGGTTCTCAAAGAATATCTGGCTCATTCCAGGAGGTATCCTGGAACAAAATAATATCTTAAGCAAGGACCAAAGTCACGGAAAATTAGGGTGGCTTTAAATCATTTGGAATTAATCCCTCGGACCTGCTCTCTTGTGGCCAAACTTAAACCCAAGGAAATCAAAGCAGCTCATGCCACCTGGCACAGTGTTATGTATCTTGGCTTCCTAAAGGATTAAAAGAAATCGCTGTCTGGATGGCAGTTGATTTCTAAATAAGAATATATTTACCTTTTAAGATACAGATATGAAGTAAAGAATTCTATATTTCTAGATCTGTCAGGGACCCAGCTCCACTGTCTGAAAGCTCTCTTTTTTTATGCCTCCTTTCACCATGTAAAAACTTGTCTGCATTGTTTGCCAGCTCTGTGGCTTTGGGCAGTGAGCTGATGTCTCATGCTGGAGTTATTTCATCTTTAAAATGAAAATAATGAACCCTGCCTGGTGTATGTCATTGAATTTGTTGTGAGATTCAAATGAAACGATACGTTTGCGTGAAAGCACTTAGGCACTTGGTAGATTGTAAAGTTATATCCAAATGACAAGTGTTATTACTCTTATTGAAAAGGTATTTGGGGAAAAAATCTGACGTACAATATGAATTTGCTGCATTTTACAAAAAAGCTTAGTTTAAGGCCTCTTTCCCTGTCATCGTTTATTCTGTGCTGAATGGCTTCCCGATTTATCCAGACAGAAGCTATCTTCTGTTGAATGATAGCAGAAAGTGCTTTTCCTCCTATTTATTACAAAGCCTGAATGCCACTTCATGAATGGAACTCATGCCTCTGAGTAAGTCAAATGTCTGTGAGTAATACCCTTTTTAGTTCTTTCAGTCATTGAAGAAGAGGTAAAACAACATTTTATGTTATGAATTCAAACGTTTATTACTCAGTACCATATTTGAGGAAGGGGCCTATCTCTCTCTTTCAAAGACTGTACTTTTTAACTTAGGAATTGTGGGAGCCAATAGAGAGCTGGGTTCTGGTACCCACCTCTAAACTTAAAGTTAACCTTACGCCTGTCGCAGGAATCTGCACCGCAGGTTGTGCATGTGCCTGTCTTTAAGCATATGCCTCTAAGCAGTCATTAGACTCAAAACTGTGTGTGGACATGCACATGGGTGTGTCCGTTTTTGAGAATGTAGATCTCTTAGCCCAGTGTTCATCATGTCTTGTTCATGCTTATGATCTCTTTAATGTATGCATATTGTTCTACTCTTATTCCCATTGTTCACTGCTTGTGAAGGTGCTTGGACCATGCATTTTTCCCTATTGTAGCTTCCTCTCAAGCAGTTCTAAAAGGTACAGAAGCAGAGAACATTGAGATCTATCTTAGGCCTGTTTATTTTTGTCTTTACAAGAAAACTATTACTTTTTTTTTTTTTTAATGCTCAGATACTTTGCCTGATAGCTCAGTTGGTAAAGAATCCGCCTGCAATGCAGGAGACCCCGGTTCAATCCATGGGTTGGAAAGATCCCCTGGAGAAGGAAAAAGGCTACCCACTCCAGTATTCTGGCCTAGAGAATTCCATGGACTGTATAGTCCATGGGGTCGCAAAGAGTCGGACACAACCCAGGGACTTTCACATTTGACTTTGAATTCTAGTTCTGCATCTGTCAATGGTGAAGGGGAAGACAGACTTTTCCTTGTCCTCTTAGCCTTTCTTGACAGTACCCTTTACACAGTCTTGAACGTGTCAGGCGTTTCCAGACTTCCCATTTGCTATTCCCCTTTTTTATTTCTTGCCGTTCTAACTTCAAGATCAGCCTGCTGAAAGGAACCTTTTTTCCCGTGTGTTTTTAATATTTATTTATTAGTACATAAATAAATATAACCCTGGTGGCTCAGACAGTAAAGAGTCTGCCTGTAATGTGGGAAACCTGGGTTTGATCCCTAGGTCGGGAAGATTGCCTGAAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGACAACCTCCATGGACAGGAGCTACATTCCATACGGGCTACAGTCCACGCAGTCACAAAGAGTCAGATACGACTGAGCGACTAAGCACAGCGCATTTAATTACGGCTGCACTGGGTCTTCACTGCTGCAAGCTGGTTTTCTCTAGTTGCAGCTAGTGGGGCTACTCTTCATTGCAGTGGCATCTCTTACTGCAAGCACAGGCTCTAGGTGCATGGGCTTCAGTCGTTGTGGTGCATGGGCCTAGCCGCCCAGCATGTGGAATCTTTCTGGACCAGGGGATCAAACTTGTGTCTCCTGCATTGGCAGGGGGATTTTTAACTGCTGGACCACCAGTAAAGTCCTTGAAATGAACTCTTATGTATGCTTTACATCTTTTTAAGTACGTGGTGTGGCCCTGCTCAAAGGCTTTAGTGTCTACTGTATGTACTTTCAGTACGTTAGTGTCTACTGTAAACATAATTAGGAATTGGTTATTCATAATACAAATGAGCTCCTTCATTTAATTTCTACAGGTTTATTTTTAACCAGCAGTCTCCTTGTAAAAACAACTGTTTACAATTAGACTGCTAACTACTTTGCAGGAAGTTGGGGGGTGGATGGATAGAGCAAGGGAAAGGAAAGACCTATTTGAGAAGCTTAAAGATGAAAAGAGACAAAGATTTAATGTTTGTATTTATACGCATTTCACACTAGAAACCAAAGAGAGCAGATAATTTCATTTACCCCTGTTGGGTTAATTTGATCTGTAGTAGGCAACTCAATATAGATTACTTGTGACACAGATTTATGCATATTAGACTACATAAACAGTGTAGAACATGATGTACACTGATATTTTAATTGTCAGTGCCAGTATAATTTAAGGTGACAGTTCTTAGTCCATGAACTGTTAAGTGAATTAGAATAGTCAAAAATACAGTTACTTAAATTTTATAGGTAAATACTTTTATATAAATGAAGTGTGATAAAATATTGAAAACTCTGTATGTTATAATCAAGCAAATTCATTTGGTGAGAAAACTGCCAACATCTCATCACCAAGGTAAGTTACTTGGCATCATTCTTTAAGATATTAGTGTTGTGTGGGGAGCCAGTTCCTAGCACATCAGATCAGATCAGATCAGATCAGTCGCTCAGTCGTGTCTGACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACTCAGACTCACATCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCTTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCACATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGAGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCCCTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCGTAGCCTTAACTAGATGAACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTATTTTAATTTCATGGCTGCAGTCACCATCTGTAGTGATTCTGGAGCCCAGAAAAATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACTGGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCACTTTCACCTTCATCAAGAGGCTTTTGAGTTCCTCTTCACTTTCTTCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCTGGCAATCTTGATTCCAGTTTATGTTTCTTCCAGTCCAGCGTTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGATGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCCTGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATATAGGTTTCTCAAGAGGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACAGAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGCAGATGTTGGCAATTTGATCTTTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCAGGAAGTTCATGGTTCACATATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCATTACGTTACTAGCGTGTGAGATGAGTGCAATTGTGCGGTAGTTTGAGCATTCTTTTGCATTGCCTTTCTTTGGGACTGGAATGAAAACTGACCTTTTCCAGCCCTTGGCCACTGCTGAGTTTTCCAGATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGGAATAGCTCAACTGGAATTCCATCACCTCCACTAGCTTTGTTCGTAGTCATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCTGGCTCTAGGTCAGTGATCACACCATTGTGATTATCTGGGTCGTGAAGATCTTTTTTGTATAGTTCTTCTGTGTATTCTTGCCATCTCTTCTTAATATCTTCTGCTTCTGTCAGGCCATACCATTTCTGTCCTTTATCAAGCCCATCTTTGCATGAAACGTTCCCTTGGTATCTCTGATTTTCTTGAAGAGATCTCTAGTCGTTCCCATTCTGTTATTTTCTTCTGTTTCTTTGCATTGATCGCTGAAGAAGGCTTTCTTATCTCTTCTTGCTATTCTTTGGAACTCTGCATTCAGTTGTTTATATCTTTCCTTTTCTCCTTTGCTTTTCGCTTCGTTTCTTTTCACAGCTATTTGTAAGGCCTCCCCAGACAGCCATTTTGCTTTTTTGCATTTCTTTTCCATGGGGATGGTCTTGATCACTGTCTCCTGTACAATGTCACGAACCTCATTCCATAGTTCATCAGGCAGTCTTATCAGATCTAGGCCCTTAAATCTATTTCTCACTTCCACTGTATAATCATAAGGGATTTGATTTAGGTCATACCTGAATGGTCTAGTGGTTTTCCCTACTGAACGGCCGAGAGGAGCTACCCCGCGTCCGAGGTCAGGGGTAGTGGCCGAGAGGAGATAACCGGCGTTTGAGGTCAGGGGTGGCAGCCGGGAGGAGATACCCCATGCCCCAAGCCTGAGGCCAGGCGCCACGGGCGGGAGGAGCTACCCCACGCCCCTAAGCCCGAGGCCAAGGGCGGCGGGCTGGAGGACCTACCCCAGGCCCGAGGCCAGGGGCGGTGGCCAGGAGGACCAACCCCACGTCCAAGGAGCCGTGGCTGCACGGGCGCAGGAGGGCCTAGAGGAGCTGTCCTAGCACATAAATTAGTAAATTTCTTGTCCTGAGATGGTTTTTGTGATCATTTTTAAAGTTAGACCAGAATTCACTTCTCTTGTTTCTGGTGTTTACATACTTTTTCCCTCCCATTCTTAAAACTTACCAGACTCATCTTTCTGAACTAAGATTTGTAAATCATTTCTTCCCATTCATGGCCCCCTTTCAGAAATGTTTACCAGTTCCTCTTTCTCCTACAGCTCTTCACTGGTCATCTGGAGCTTGGCATTCAGTACTCCTCACATTCCGACGCAGCTTCCCTCCTGTTCTACTGTTTTACTACACACGTCCCCATTCTGCTTATCTAAGCTGGTTCCCTAAACATGTATCATCGATCTCCTTCCTTCTACTTTTGCTTGTATATTCCTCCTATCTAAACACCTTACCTTCTCTTCTTCTTTAGTCCTGTCCCTTCTGTAAACCCAGTATAAATTCAGCTTATCTTTTAAAGCCTACCTTGACTGTTAGGAGTTTCTGGATCCTTTTATTAGTTTCCTTTTTATTATGAATTACTGATTTCACAAATTTACTCTGTATTTCCTCAGTGAGATTTTAAGTTTTTGGGTCATTCTTTAACACCTATCCTGGGTTAGAAACACATACTAATATTTTGTATTGAATACTGTTTATTTTTATCCTTAG
Seq C2 exon
GTTTACCATTGCTTGTTCAGAGAACAATTGCGAGAACTATTGTGTTACAAGAAAGTATTGGCAAAGGTCGTTTTGGAGAAGTTTGGCGAGGAAAATGGAGAGGAGAAGAAGTTGCTGTTAAAATATTCTCCTCTAGAGAAGAACGTTCATGGTTCCGTGAAGCAGAGATTTATCAGACTGTCATGTTACGTCACGAAAACATCTTGGGATTTATAGCAGCAGACAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018035:ENSBTAT00000024010:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(58.6=21.8)
A:
NA
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]