BtaINT0148122 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010047 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr9:93235487-93236661:+
Coord C1 exon
chr9:93235487-93235605
Coord A exon
chr9:93235606-93236552
Coord C2 exon
chr9:93236553-93236661
Length
947 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
ATCTTGTTTTTACCATTCAGGTC
3' ss Score
9.67
Exon sequences
Seq C1 exon
AAGCACTAAAGGCAATGGAAAAAGTAGCCAGCCACATCAATGAGATGCAGAAGATATATGAAGATTATGGGACCGTATTTGACCAGCTTGTAGCAGAGCAGAGTGGAACAGAGAAGGAG
Seq A exon
GTCAGTAGGACTTTCGGATTCCAAGAGGCTGAATGCCTGTGACCGTGGGTCTGGAGGTGACCTCCAGGCCAGGCCACCCAGTTAGGGCTTTCCTACAGGAGAAATTGCCTAAAATTTTCTTTTTGATCCTAATGCTTATTATAAGATTTAGATGTAAATATAACATAAAATTGACTGCATTGGCCTAAAGGCGTAATCATCTGTTCTGTTAATAACTACTGTACCCAAAGAACTAGTTCTTAGCTCGTATCCGTACCTCTTCCTCCTCTTCCTGTGGAGCGTGAGGTCAGGACAAATCCCAGAGGCTAGACTATAAATGGAGAGCTGGGGCTGTGGGAGGGGAGGGGAGGGATAAAGGCAGTGGGAGTCAGCGTGTGGGAAGAGAATTGAAGGCTTTTCCTTTTTTCCCTTTTCTAACCTCAAGTATTGGTGGCTACCTCCTTACTTATAAAAGCAGTTTAAGTGGAATTTGACAATTTCCCTACTTTTCTTCTCTGGCTGGATTACCAAATTTAGCATCTCTAGCTTTAAAAAGTCTACACATAAGGAGCAATGTAGTTTAAGTAGAAAAAGGCAAGAACAGGAAACGGTTTTTTTTTTTTTTAATTACAGTCAGTTTCAATGTTGGTACCTCTTTTATTAGCAGGCCTCATGTGGTTTCAAAGGCACTTGGGATGAACTTTGACCCTGGGGTGGGAGGAATGTCATCCCACAGGTCACAGTGTGTGTGCCTTGGGGCAAAATGCCTTCACCTTTATTTTTCAGTGTGGTGCTTAGCTCATATTTTCAAACCTGCTATTTAAGGCCCTGTGTTCATGGGAACCATAAAAATGGAACATACTTGAGTTTTAGCAATGACCATATGTGTGTGATCCCTCTGTCCTGAGCCACCCCCGCCCCCTGCCCCTGGATTTCCATGTCTCCTTGATCTTGTTTTTACCATTCAG
Seq C2 exon
GTCACAGAACTTTCAATGGGGGAGCTTCTGATGCACTCTACAGTGTCCTGGTTGAATCCATTTCTGTCTCTAGGAAAAGCCAGAAAGGACCTTGAACTCACAGTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010047:ENSBTAT00000013256:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(7.4=35.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTAAAGGCAATGGAAAAAGT
R:
ACTGTGAGTTCAAGGTCCTTTCTG
Band lengths:
222-1169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]