GgaINT0085347 @ galGal3
Intron Retention
Gene
ENSGALG00000013645 | TIAM2
Description
NA
Coordinates
chr3:52484887-52486826:+
Coord C1 exon
chr3:52484887-52485005
Coord A exon
chr3:52485006-52486717
Coord C2 exon
chr3:52486718-52486826
Length
1712 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TATTGTTTAATTTAATCCAGGTG
3' ss Score
7.26
Exon sequences
Seq C1 exon
AAGCGCTGAAGGCAATGGAAAAAGTAGCAAGTCACATCAATGAGATGCAGAAGATATATGAAGATTATGGCACTGTATTTGATCAACTGGTTGCAGATCAAAGTGGAACAGAGAAGGAG
Seq A exon
GTAAGAGAAGGAACAACGTATTTTATTCGCCCCTTCTAACTGTTGGGGGTCTTTATCTCTTCCTGAAGTAATTTTGGGAACTTATTTGTGCTGTGCGTCCTTCATTCTCCTTTAATATTTTGACTTCCATTTCGTATCTGCCTGTGAAGCTTCTTTTTGTCAGTAGGTTACAGTAAAAATTCTCAGACAACCTTCTGGACTGACAAGAATTGCAAACAGGCATAGACGTTAATTCTCAGTAGGAAAAAATAAAGACATCTTCCTCTTCTGAAGTGCTGCAGAGATTATCCATGCCCAAAGGCATTCAAATTTTATGCTTCAGAGTTCTTCAGTTCTTAAGATTTTTTTTTCCACCCATATAAATGAAAGTGGCAATTCTAGGGATTTCACTAATGCCTGTTATTCTCATTCTCTACGCTTCTAGTGCTGAGGCATCCGTGAGTATCTGAGAGAGCAAAAGCCATTAGCTGAATGAACTGTGCGCACACATCTCACAGAACTGGGGCAGAGATGTCTCAACTTAGGCATTTACATCAAACAATTACGAAGCAGACACAATCAGTAGAGGTAGAGATTGAATGCAAAGATGCCAACTCAGTTGTTTTATTTCCTTACATTAAAAGCCAAATCGCCTCCATTGGCAGTCTAGTTTCTCATCATTTATAGGAAACAAACTTGACAGCCTGAGATACTCTTCAGTTTTACACTGTAGTCTACTGAAGAAATAAGAGCCCTGGAGAGCAAGACCTGCATTAATTATGCCATTGGCAGTATCATTAATACTAATTACTGTATAAAGACATTTACCTCTAATAAATCAGCCAGTTTGCAACTGGCTATATGTAGACAGATCATCAGGTCAACTTAATCTTATAAGCTATAGTAAGATATATTAGTAAGCTAAGAGTAAGAACTTCTATCCAGCATCCGTAACTTAGATGCTATTACTTTTATGGTTATTATCTGTTTTATAAAGGCTGCTCTGAAAGCAATGCCTCTTATTTTATTCTGTTGGCCCACAACATCGGAAGGAGATGGTGGTGGTGTGGCTGTACAGGCTGACCCTTCCCACCAGTATTTTGTTACGTCTTGTTGCTCTGTAACAAATGGCAGCAGAGGGGCAGTCTGACAAATGGCATCCAACACAGAAGTGCATATGAAGCAAAGGTGTGTCACTGAATTCCTCCATGCAGAAAACACTGCACCCACTGACGTTCATTGATGCTTGCTAAACATTTATAGAGACAGTGGAAGTGAGCACAGTGAAGAGTGTGTTTCAGCAGTGGTGACAGCAGTGTGAAAGACAAGCCACATTCCAGACAGCCATGCACAACTGTCACACTGTAAAATGAAGAACATATTAACTAGCTCATCCATGTGAATCAGCTGACTGTTGAAAAATAGTTTTTGGTAGTTGAGAATTTGCTCTATCAAATCCATGTTATTGTGCTCTTTGTATTTGTTGTAGTTACCATGGAAATAAATGGGAGCTATTACTTTCAGAGCAACCTAGGGGGACTACTCCCACTGTCCTGCCTTAGTACAGATCTCCCTGTCTTGCTCACTGTGTACATTCATTAAGTACAGAAATAATATCATTAATGCTATCAATGCGTACTCATTTTAATTTACTTCCACCTGTGGATCATGGCATTGATGTATATTGCTTATTTTTTTTTTCTGTTAATTAATTATTGTTTAATTTAATCCAG
Seq C2 exon
GTGACTGAACTTTCCATGGGAGAACTTCTGATGCACTCTACAGTTTCCTGGCTAAATCCCTTCCCATCACTGGGCAAAGCAAGAAAAGACCTTGAACTTACAGTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645:ENSGALT00000022192:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(7.4=35.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCTGAAGGCAATGGAAAA
R:
ACTGTAAGTTCAAGGTCTTTTCTTGC
Band lengths:
222-1934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]