DreINT0163215 @ danRer10
Intron Retention
Gene
ENSDARG00000025920 | tiam1b
Description
T-cell lymphoma invasion and metastasis 1b [Source:ZFIN;Acc:ZDB-GENE-120221-1]
Coordinates
chr15:42584148-42587547:+
Coord C1 exon
chr15:42584148-42584266
Coord A exon
chr15:42584267-42587438
Coord C2 exon
chr15:42587439-42587547
Length
3172 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCGT
5' ss Score
6.43
3' ss Seq
GGCGTCCGCTATGATTACAGGTT
3' ss Score
5.31
Exon sequences
Seq C1 exon
TTGCAATGAAAGCCATGAACACAGTGGCCAGCCACATCAATGAGATGCAGAAGATCCACGAGGAGTTTGGAGCTGTGTTTGACCTCCTCATCTCTGAGCAGACTGGAGAAAAGAAAGAG
Seq A exon
GTTCGTCAACTTTACATCACTTCATTCTTTCAATTATTTTCCCCTGGATTAATCCCTTATTTATTAGAGGTCGCCACAGCGGAATGAACTGACAACTATTCCAGCATATGTTTTACCCAGTGGATGACCTTCCAGATATAACCCACTTATAGGAAGCACCCATGCACTCTCACATTCACACACACTCATACACTACAGTCTATTTCAAGAGTTCACACTTAGCTGATGATTGATAATATAGCTAGTTTGGCGTGCTGTCCCGGGAGAGAGCCCTGAGCTTATAAGATCCTCGAGCCCTGGGCTCCCTCCCGTTGCAAGGCGAGAGGGGAGTTTGAGCTCAGGTAGATCTCGATGACTCCCCCTCTTGCTTGTTGTAGCTAAGTGTCAGATATGGATGCTGAAAGGTGTACTCAGAGTTTAGCTAAAGTATTTGGATTAATTGTTTAGAGTGCTTGTTTTTGAACTGTGGGAGGAAACCGGAGGACCTGGGGAAAACCCACGCGACCACGGGGAGAGCGAGCAAACCCCGCACAGAAATGCCGTCTGGTTTGGAAAGGAATAAAACCAATGCATTCTTGCTGTGAGGCAACAGCGCTAACCGCTGGCCACCATGACGCCCGTTTGAAAGGAGGGAAAGTAGGGTTGGGTGGGAGGGTTTCTTCAAGACGAAGATATTGAGATGAGAAAATTCTTGTTATTTATAGTGAGTTAAGGATCGTCTGATAGGATAATCAGTCGTTAGCTAAAGTTGGAACAGCTGTGAACAATCATAAGCAGGTGATCTTCTCAAAATTTGTTTATAAATAAACATCACTTAGTTCATCCAATTCACCTATAGCGCATGTGTTTGGCATCACAACTGTGTTTGCCCAGAAACTGTAAAGAAAATGACTGGCCACATTTTATAAACAACTGTCATATTACAGTTTTTCTTGATTGCTTGGATGCAGTTGTCAACTGAAACTCCACATTTTCAAAACAGTTAACACACAGGCCTAAACAGCGGCACTCATGGTCAAAATGACACATTTTGCTTGCAAAAGGCACATATCGTGTCAAAACATTTAAAATATGCAACAAAAGCTAGTTTTACCTTCAAACAACAAAACTTGCAAACAAGTATATGAGCTCTATCAATTAATCATTACACAATGGAAAACAAAATAAAAAATACATAACCACCATTGCTTGCCATTGTAGCTTATTGCCAATGGCATTTGTTGTCTTTCTATTTGGGCTGTCATATTTGCCTTTTTGCAAAGAATTGGATCCAGAATAAGATGTGCTTTGATTAAATATATTTTGAATTCATGACATTTTTCAAACTGTGGCTGAAAACTGAAATACTGTATAAAAAACAGACAAAAGTAATAAAATACTGTAAATATTAGAGAAAACACATGTAAACTAATATACAGTCAAATCTATCGGGAGTATAGGACATAGCCATATTGACCTCCTCCATCAATGCTGGCACAGAACAACACAGACCTTCCATCGTTTTTATAAAGTTTGCAGAATGATATCTAATTGAAGATTTGTGTGAAGGAGTGTCAAACCGGTGCTTCAGTGATTTCATACTGATGTTAGTAGTTTTTAATAGTTCGGAATAGATGGTTTCTGTTTGGTTACCATAACTAAAACAATGGAGTTTGGACGGCTTGAATGACATCTGTGTTAACTGTTTTGAAAAATGGTGGGGAAAATGTGTCAACCCAATGAGAAAGGGTTTACACATTTGCAAGACCTGTCTTCTGCTCTGCTGACATAGTGATAATGAAAATGAAGAGGAACCTAGTTTCTTTAACCAGGTCAAAGCAAACAAGAAAAACTGTAAAGGATATCAGTCTAATATTTGATCCAGCTGGTTAATTTGCGCTTTATTTGTAGTTGCGTGAGTGTAAGTCAGAATAACAGTCTGAGGGGTTTTCAGCCAGGTTTTTTCTTCTGCAGCTGATAAAAGTTGAAAGAGTTGGATCCGATTTCTTCTTTTCTTCCTGAATGGACGGGCATCTGCCGCCTTATTTAAATCCTGTCAGCTTATTCTGTGAATACAGTCTGAGTTTGGTTGTGTAATATGGCTGAAGCTCTGAGTGATGCAGCCAAAGACAGAGCAGATCCCTTCTGCACTTCAGCAGAGAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCGTGCACAAGTATGTGTGTGTGTGTCTATCTTTTTCTCCCTTTCTTTCTCTGCATGTGTTTGTCTCTCTCTTTCTGTGTGTGTGTGTGTATGTGCAAGCATGTATGCGCGCACAAGTCTGTGTGTGTTCTGTATATGTGTGTCTCAGTTTCTTTCTCTGTTTTGTGTGTGAGATGCAAGTGTTTAGTTGTGTTTGTGTGTTTCTGTTTCTGTGTGTCTGTGTGTGTCTGTCTCTGTGTGTGTGTTTGTGTGTCTCAGTTTCTGTCTCTGTTTTGTGTGTGAGATGCAAGTATTTGTGTGTGTGTGTGTGTGTGCAACTGCAAGCATGTGTTTGTGTGTATTATCTCTTTCTGTGTGCATGTGTGTGTTTATGTAATGTGTGTAATTCGTGTGTTTATGTGTAGTGTGTATTTTTGTCTGTCTCTCTTAGTGCGTTTGTGTGTGTATCTGGTACTGTGTGTGTGTTTGTGTCTCAGTTTTGTTTGAGATGCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTATGTATTGTGTGCATTTGTGTGCGCGCGTGTGTATTTGCAACTGCAAGTATGTGTTTGTGTGTATTCTCTCTCTGTGCATGTGAGTTTATCTGTGTGTATTTATGTAATGTGTGCATTTGTGTGTGTGTGTGTGTGTGTATGATTGTGTCTATGTCTGTGTGTTTATGTGATATGTGTATTTTCGTCTGTATCTCTTAGTGCCTGCGTGTGTGTGTGACGTCCTCATATCTCAAAATGCTTATAAATCCCACAGAATGAGTTTAATCAGAGAGTAAAGCTGCACACAGTCTCCTGTGATGGTTGGGTTTAGGGGTGGGGTGGGGTGAGGGCAATACAATATACGGTTTGGACAGTATAACAGAATGGAAACCTATGTAATGTCCCCACTTTTCACAAAAACAAACATGTGTGTGGGTGTGTGTGAGAGTGTGTGTGTCTAACGGTGGCGTCCGCTATGATTACAG
Seq C2 exon
GTTGCTGACTTGTCTATGGGAGATTTACTCCTCCACAGCAGCGTGACATGGATCAACCCGTCCTCCTCTCTAGGAAAGTGCAAGAAAGAGCCACAGCTGGCCACATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025920:ENSDART00000169751:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(7.4=35.0)
A:
NA
C2:
PF0016924=PH=PU(23.3=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]