GgaINT0116825 @ galGal4
Intron Retention
Gene
ENSGALG00000015842 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:103797709-103799707:-
Coord C1 exon
chr1:103799589-103799707
Coord A exon
chr1:103797818-103799588
Coord C2 exon
chr1:103797709-103797817
Length
1771 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
CGTGTGTTTGTGATTGGCAGGTT
3' ss Score
8.16
Exon sequences
Seq C1 exon
TGGCCATAAAAACAATGAACAAAGTTGCCAGCCATATTAACGAAATGCAAAAAATCCATGAAGAATATGGGGCAGTGTTTGACCAACTCATAGCAGAACAAACAGGAGAGAAAAAAGAG
Seq A exon
GTAACAAACAATTTTTAAATAAAATAAATAGGCTGTTATTTTGGTGCCTGTAGCGTGAATGTTAAATTTTACCAAATAGTTGCCTTTCCTTCTGTGTCACTGAAGTAATTCCTGTGCAAAGAGGTAAAACCCAATCCAGTTAAAAAAACTGTTTCTGTGTATACAGTTCACTGAGTAGGACCAATGTAAAGAAGTGCATTAATTCACTTTGAAGGTTGTGCTTGGGTCAAAATCTCAGTTCAACTTTTTAATGTCTGTATCTTGGCTCTCCTCTCTCAAGACAATCTCACCCCACCAGTCTGAATAGATGGATGTCCTGAGGCAAGTTTGTATTTATCTCTTTAATCACTTCAAAGAGATCAAAGTGAGATCCAGTGTGTGTGAGTAGCTGCTACTTCTGATTCAGAAAGTGTGTTAGTGGGCTTGATGTATGAGAGTCCTGGACTTCAGTCCAGATCTTGCAGAGTGCTTACTGAAACACCTGAAGGTTGAATATGCTCAGTCTTGGGTGCAGAAACCTGTGGAAGATGTGTTGAAGTTTCAAACTGAGACCTGGATCACTCATTTACTGAGTAGAGTGTGGGCCTTCAGCCCAACAGTGTCATGAAGGAGAGTAGTGTGAAGTAATAGGCAAGGTCAGGAGAGACTTGAGGAAAAGGTGTAGACATGCTGAAGCTGGAGAAACACGACGATAAGAAGTAACGGTAGTAGGGTTTTGCCAACCACTGGGATGAAGATCAAGCCAAAGAGCTGCTGTGCAAATACAGGACACAGGTGGTTTGGGATTGAATGAATGGTCCTGGGGAAGTTTTGGGTGAGCAACTTCTACAACAGCAGCGGGGAGAAGCAAGTGGTGGAAGAGAGCAGAGACCAGGTGACCTTGGCAAAGCTGTGCTGATGCTGGCAAAGAGAAGTTGGGAGAATGGGTCAGGACTTCTGTTGACAGAACAGCTGTGGCTTGGTGTTAATTTGGGAGAGGAGACAACAAACATATCTTAGTGTTGCTCTTGTTATCAGGGAGAGCTCAGGTTGTTTTGCTCACGTTATCTGTGATATCCTTTTGCAAAAGCCAAATTTCACTGAGAGAAGGGTGGAGGAATGGTGTAAGATGGCCCCAAGACTGGAGGTCACCCTTGAATTATCACTTTGGGAGAAGTCAAAGTAAAAGATCTGGTTGCTGCAATAGCACTAGTATGCATATCCCAACAGTCATTAAGAACTCTGTTCTTAGTCCATTCTCATCAATATGATTTTCACAAGTGAACCTTTGGGGGAAATCACGAACCATGGCAAATATGGGGGGGACGTTGCTGTGACTACTTCACCTGGTGCTATCTTTGAACTTCACTCCAAACCTCATGTGTGTGAGTGGTGGGATGGAGTATGCTTAGATCTTCAAACAAAATACCACGAAGCTGGTAAGAAGAAGGATGGCAAAGGAGCAAACAAAAACACAAGGGAAAGAGTTTATGTTTTTGTCATTTTGCCAGCCCTGGCCTCCTACAAAATTTTGAGAGCCAGGCTGAGTCTGGCTTCTTCTTATTTATGCCCTCCAATTAAAGATTTACACACGTCTATTGCCATCTGTCAGTCTGTTTGCACACACTTGCAGTCATCTGGTTAAATAACCTATTCCAAAAATTTACTTGTGTTTTGTTTGTTTGTTTGTTTTAGATTTAAGTCCAGGAAAGTTTTCTTGAACTGGAGTTCAAGAAAGAAAAATTTGGACTGAAATACACTGTTTCTTTGTGCGTGTGTTTGTGATTGGCAG
Seq C2 exon
GTTGCAGACCTTTCCATGGGGGATTTGCTCTTGCATAACACAGTGATATGGCTTAATCCTCCTGCTTCACTGGGGAAATGGAAGAAGGAACCTGAGCTGGCAGCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842:ENSGALT00000025542:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(7.4=35.0)
A:
NA
C2:
PF0016924=PH=PU(23.5=83.8)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAAACAATGAACAAAGTTGCCAGC
R:
CAAATGCTGCCAGCTCAGGTT
Band lengths:
222-1993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]