HsaINT0167072 @ hg19
Intron Retention
Gene
ENSG00000156299 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:11805]
Coordinates
chr21:32508251-32513554:-
Coord C1 exon
chr21:32513436-32513554
Coord A exon
chr21:32508360-32513435
Coord C2 exon
chr21:32508251-32508359
Length
5076 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTCACGTCTCTGGCTTTCAGGTT
3' ss Score
9.54
Exon sequences
Seq C1 exon
TGGCCATCAAGACCATGAACAAGGTTGCCAGTCACATCAATGAGATGCAGAAAATCCATGAAGAGTTTGGGGCTGTGTTTGACCAGCTGATTGCTGAACAGACTGGTGAGAAAAAAGAG
Seq A exon
GTGAGGGTCCCCATCTTCTCAGGACATCTGTCAGGAAAGCCGAGTTTGAGTTTGCTTTTATTTATTTATTTATTTTTTAAAAAGGTGTTACTTGTAAGTAAAATAGTTAGGATGCTGTTGTTTTTCTTAGTGGAACATCTGTGCTTTATCCAAGGCTGCAATGTGAATTTTCTTCCTCAGCTGGACTATTTCTTCCTGTAGGAAATGTTTTCCTGATGTTCAGCTCCTCACCCTGGGGATCTCTGGCTTTATTCTGTGTTAAGTGTGAAAGTGAACTTCCATTACCACAATCTGGGCTGTTTCTAGAAATGTCATGAAAGTCCAAGGCTCTACCTCCAGAGATTAGAATGACACCAGGCACATAGTGGGTGCCCAAAAAATAGTTGTCAAAGGAATGAAAATTTCAAATGACTCTGAATCAGTTAAATCTACCCAAAAACCTACTTAGAAGAGCAGTGGCAGGAACAGATACACCTGAGAAAGACTTAAGGTGAGCTAAAAGTTGTGCCTGAGTCATTAACATGCACTTACCTGAATAAAAGTATGTTGCCAACACAGAGGAGTGGTAGATGTTTGAGATGATGGATAAGTTAATTGCTCTGATCTGATGGGTTATACAGTACATATATCAAAGCATTACTGTGTACCCCTGAATACATACAATTATTATTTTTCAATTACAAAATGCCAATAATACTTAGAGGAATCATAGGGATATGATATATAGTAACATTCGTCAATGCCTCTGTATGCTCAAATTCAACTAGAGATTAGACTCAGTTTTTCTTTCCACCTTAAAAAAGAGAAAATGTGGGAAGGAACCTAGAGGAAAAACACTCTTGCTGTGACTAGCAGCAGGGTTAAAAGCAGTGTGGGTGGGGCAAAGTTTGGTTGTTTAGTGTAGGCTAGAGAAAGCACCTTATCTCCAGAGATACTAAAGGCCATTATCCAGGCTCATTTTTTTGTCCTTAATGAAACAAAACAAGTTTTCAGGCTGTTAAAGGATAATTTTCTGAAAGAGGTAAAATTATGACCTCTCATAATTTATTTTACTCATAAGATGTGAAGGACCCAGGCAGGTGTTGTAAAGGTTCATTGGAAAAATCACAATCACAGAAGTTTACATATGGAGTGAAGAAATGTTGAGGTGAATTGTAAATGAGACAAACTGGTTTTTCCACAGCTGGAGGAAATCAGCTAGGCCAGTATCAGACTGGACAGAATTTACACATCTGTCTGTTACCTACACTTTACAAAGAATCGCACAGGCTCTCAAAGACAGTGTACAGTCAGGATCTGATAGCCCAGGAAGGTCTGCTGTAGAGGATATGTAGTTTTCAACTGCAACACAATTTTGTTTTTACATAACATTACAAGCAGAGCATGAGAATGTTCTGAGACTACTTGGCAGGTAATTTAATCTATCAGAGTATAGAAAAGATGAAGGTTGCCACCCTGGACTTAGCTCTCACTTTCTTATAAAACTTTATAAGAAGAAAAAAATTATGCTTATTAAAGAAGAGGGCAAAATACAGAAAAAGGCAAGAAGAAAACTATGGTTTCAAGACATAGAACTTACCATATTTTGGTGTTGATTTTGATTGTTTTAAATTAATATCTATGTATATGTTTAGTTATATCTTGAAGGTAATTTTATACCTTGATTTTATGTTGATCACAGAATTTTAATGCTTTTTGTTATTGACTAATATGAATAATACTGTAAACTTTTTTTTATTATAAGAAGTCCTCCCATCCTTTGGTTTATTTCATTCTGACAGAAGTGCATTTTACTGGGCCATGGAAATGAACATTTTCATTACGTCATATTACATTTTCTTTATATGCCAAATTAATTATTAGATTGTAATGACCTTAGGAGCAAATGACCATGATGCTAAAGATTAGAAGGCGAAATGGATATTGGGTTGCAAAGAATTTAGGAAAAAAAGATGAATATGATCAGAAGTCAGAGACTGTAAAAGGGAATATGGCTTCAGTGAACCTGGAAGTCCTTTAAAATGAAATTCTGATATGTAAGAAATCTTTCCAGTGAGGAACAAAGTGATATAGTGCTATACAAAGTATTTTTTGTGGGCTGAGATTGTAAAAAGAAATGTGCAAAAGATGGAAGGAGGGACACTGGCTGAGTACCAGGACTGAAGAGGAGGAAAATCCTACTTTTACCAGGAGGTGCAAAGCCCAGAAAATTTCTGGCTTGGAAAAGATGCCAAAGAGAGCAAGAGAAGATATTGTTGTGGAAGGATAAGACAAACGAGCAGGAAATAGACCCCCAGTGGGAATCAATTACTCCAAGGCAGTTGGTTTTACTCAAGTCTTAAGCCCCATTTCATCTCTTTTTCTTCCATTGAGGAGAATGGCCTTTAAACTGGAAAGGATGCAGCAGCCTCAATGCCGTAAGAACAAAACCCTAGGGAGAATGAGTCTTGGGAAATAGGATGGTCTGTGCCAAGATCAATGACAATTCTGTTCCACTGCTCTCAGCAGTATATTGGAAGAATTACGGAGACTCAGGCGGGTGATTGTGGAGGTACCCAAATTATATTCAGATTTTCACAAAAGTAATTCCTGATCCTTGTGGTTCCCTCTTAGTGGCAATGTGAAGTAACAGCCTAGAATGGATTGATGAAGTTTGTAAAGAGGAATAGGAACATTTATCAGTATCTGCTGGTAACAGCAGGTTTATTGTAAAATGGTAACATTCTAGGAACACAAGGTACCTGAATTGGGTCTTCAACCAACATTCCTTAAGATATCTCTGAAGGCAAATAGGTTCACAGAGAACAAAGCTGGCAAAGAAACAGCTTTTTGATGAAACTGGGCCTTCAACCTCCTACCCCCATGTTAAACTCTGGGGAGTTAGGCTAAGAAATCCCTTTTGCTTAACTAGGAGGAAGAAGAATGCAAGAGGGCATTTCCCCTTAAAAGAAGTCCTTAAAAATGCTGACTCAGTCGGGCATCCCAGTCCTTAGTAAGGTGGAGGCCTCCCAGCAGAACTCTTTCTTGGGGTTTGGGAGGAGGATTCAGAAGGGAACCAGTGGAAGCCCCAGAGAGAGGCTGTGGCCAGAGGGAGCACCCTGACCCCCTAGTCCACTTGCCCTGGGAAGCTTGTCCAGAGAAAAACCCTGTGCACAGGAACAGCATCAGCCCATTTTCAGTTGTGTAACAAATAACTGGAAATCTCAGTGGTTCTCTACAACAGATATTTATCTCGTATGTGGCTTTGTAGGTCAACCAAGGTTTGGTTTCTCTTGGTTAGCTCCAGTTCTGAAGGTTCTGGTGTGCTCCTTGTCTCTTCCTTCCAGGATCCAGGCTGAAGCAGCAATGGCTGTCTTGGGCAAGTCCTTCCCATGGCTGGAAGGTGGGCTCTAAGTCACATGCCTACACCCAAAGTCATCCGGGCGGCGATGTGTGTACCCTGCCTAGTCTAGTGGGAGGTGCTGGAAAATCACATGGCAGAAGGTGCAGATAATGTAATTCTGTTGGAAGAAGTAGAGTTTGGACAGTCTACCATGTTGGCCTTTAATCACTTTTAAAGACGTACTCCCAGGGGCTGTGGCCTCTGGGAATTTGTCTTTTGTATGTAACTCCTCCTCTTCTATGTGGGTCTTCGGGGGATAGGTAGTGGAGACTATGTCATTACCTTGGCTGATCATATCCTGGGGGTTTGGTTGATGAGTTACTTAATATCTATAGACAAAATAATATGGCTGCTTAAAAATTATTTTAACCCTTGATTGTACTAATGGTACTATAGCTTAGTAATAATGACAGTGATGATTATAATAATTTCAATCAAGGGAGGCAACAATACCTCTGTATCCTGTACTGCTGGAGCCACATCTCAGCACGGTAGCCTGTTTTGGTGGCTCGAGAAGGGCAATCCAAACTGCACTGTGTTCAGTGGCGGGTCGCCAGGTTGCTGCTGTATAGGAAACCCAGCTAGATTTGGAAGGAGGCCAGTGACTGCAGTGAGAAAAGCAGACGGGACTGTTGTGAGGCATAGACGTTGAACTTGCATCAGACTCTCTGGATCATCGTGTCTAGATGGCTCTGCAACCAGCACTTGTCTGTCGGAGACAGTTTAGCGTGTGACCGCTGGGGGTGAGCGACTAAACCTCATGGTCTCTTGGGATTCCAGCATTCACGCTGCCTGTGCCAATAGAGGAATCTTCAAACTCTTTATTGGCTTCTCTCTCCCTCATCTAAAGTGAAATAAAGTCGTCTTTGAAATGGATTGGAAGAAGAAATAATTTGCCTACATTTCCCAAAAGTGGATATTCACTGGTGGAAATGTCTGCAGTTATCTGGGGGTGGATCTTTGTCATGGACGGCCATTAGCATCTCCTTGGGAAACTGTCTCTGAACACAAAACATCTCCAGTTTTGTAGATCAGTTTTGACAGACTAACTGCATGTGAATTTCAGAGCCCCAGTTTGTACCTATTTGCCATCCTTTTCTGAAATTCTAGTAGACAAGCATGGAATAAATGGGGAAAAAAAAGATGAGCCTTTTCTCTCCCCTGTATTCCATGTGTTTCTTTGGGAATGGAGAGGATTTATTTTTCAATTAGGAGATTTCATATGAATTAAAGGATTTTTTTTTTCGTTAAAATTTCATTGTATTGTTCCTAGCTCAAACTTGGCTAGAACATAATGATACTATTATTTCCCATTGGAAAGGTTAACTGGATATTGTATCTTCAGCCTGTTTTGATGGGAGGTGGTGTTTATTGAGACAGTCACAAATCGAAAATATTTTTAAAAAATGTAGTCTGTCATTTTGGTGCGATTTCTTTTCTCAAAAACATGAAATTGACAAGTAAAAATTTTATATATTTATGGTGTACAACATGATGTTTTGATATGTTACATTGTGGAATGGCTAAATCCAGCAGTTTAACTTAGCATTATCTCACATATTTAAGCAAATGTTTTTAGGAGCAGTATTTTCTTGAAGTAAAATTAATATCAGCATGCTGAATTTTCAAACATCATGAAAATCTGAGTATTGATAACACCACCCAGTAAGCTTTGTCACGTCTCTGGCTTTCAG
Seq C2 exon
GTTGCAGATCTGAGCATGGGAGACCTGCTTTTGCACACTACCGTGATCTGGCTGAACCCGCCGGCCTCGCTGGGCAAGTGGAAAAAGGAACCAGAGTTGGCAGCATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156299-TIAM1:NM_003253:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(7.4=35.0)
A:
NA
C2:
PF0016924=PH=PU(24.1=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)