MmuINT0160100 @ mm10
Intron Retention
Gene
ENSMUSG00000002489 | Tiam1
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89799961-89804811:-
Coord C1 exon
chr16:89804693-89804811
Coord A exon
chr16:89800070-89804692
Coord C2 exon
chr16:89799961-89800069
Length
4623 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTCCCGCCTCTGGTTTGCAGGTT
3' ss Score
9.32
Exon sequences
Seq C1 exon
TGGCCATCAAGACTATGAACAAGGTCGCCAGTCACATCAATGAGATGCAGAAGATCCACGAAGAGTTTGGTGCTGTGTTTGACCAGCTGATTGCTGAGCAGACGGGAGAGAAGAAAGAG
Seq A exon
GTAAGGAGTGTTGTTGAACCCCACTCCACCATCCCCCTAACCCCCCCTCCCTCCCAGCATGATACTCTCTTTTTATGAGGTGCGATTGTTTCCGTTGGCTGGTGTTGTGCAACAACACTTTTCCTCAGGAAATACAAACACCCGACCTCAAAAAAGGACCCCATGATAGACAACAATACAGACACCACCAAAGTCTAGTTTGGCGAACTAGTGAGTTTTATTGGGGTTACATATAGGAATATGGGTAAGGGGTTACTTACAGGAGCAGAAGTGACTCAAGGACAGCTGTATCACCAAAGCCCACCCCAGCATGGTGACAGCTAACAAAAGCTGGGAACCTGGAGCTCATTGCACAGCCTGCAGGCAGCTCAACAGGTTGGACAGTGTCCTTTCCAAGTGACTCAGTTGATCTAAACCTCTTCCAGGAGCTGGTTTCTGCTTCTTCAGGGCAGCTGGTCTGGGCTAAGAATATTCACTGCATCCTGACTTGTCTGAGAGTGACTCTGAGCTGTCTATTTTGCTTACGGGGGGGGGGGGGGTGTTACGGTGAATCCTGTCAGTTTCAGGGACTTCCTGAAGCTGTTTTGAGTTATTTAATGTCTGTCTTGAGGATCTTCCTGGGAGATGGAATACTTCAATCTTGAGGAAACTGCTATACATCAGGACTATTGTCTTTAAAGCCCCATATGTCATAGTTTCTTTTACTGTCACTTTGAGGAAATACTCAGACCATAGCACTTAGAAGGAGGCTTATGTTGGCTCACAGTTCAGGGTAAAGTCCATATGGCAGGGAAGTCACAGTGACAGATGCTTGAAGGAGCTGGTCACATTGTGTTGTAAGTCAGAGAGCATTACACACATACTGGTGGTCAGTTCACCGTCTCCATTTTTCCCAGTCCTGATCCCTGCCTCTGGTTAAGATGACCCTCCCCACCCCTTATAAAGTATCCCCCAAGGCCAGCCTTAACCTAGGCAGTTCTTCAGGTATACCCCATGGTGTGCCTCCTACGCATCGAACTGACTATGCTCAAGGCTACACAAGAATCTTTATTTTTACCTGAGCTGTTTCTTGGTAGAGTAAACATGCATCTGGTGTTCTGTTCTTTGCCTTTGGGGTCTCTGGTTTTCATTTGTACTGCATGAGGAAGTGAGCACCCTAACCCAGTGTGGGCTATTTCTGTGAATGCCTCTGGGGTGTGACTCTGAGTCTCCGGGTTAGGGTATTAGTTTTCATCAAGTACCAGCCACATAGCTAGTGCCTAGCAAATTAGAAGCAGCCAAGGGGATATTTTCCCTTAGTGGTCCATTGCTCCGGAGGCTTCAAAGGGAGAAGAAACCAAAGGGCAGCTGGAGACCCAAGGGCTGCGATTGGGCAGAGTGAGCAGCACTGAGCCTCTTGGTACTGTCACTGAGCGCAAAGTTGTCAGGACGTCTCGGAGGTGATGGCAGTCCATTTTTACCCATGCCTTTCAAGGCTTCTTTCTACAACCCAGATAGATCCTTGCAGGAGCCAGATTGCTGTCTTGGGTATCCATGGCAGGACTGTAGAAGTTCTTGAGGTCTGATAGAGATGTGTTATGCCAAGTTCATAACCCAAGTCATGGCTGTGCCCCAGCTCACATGGGCAGGGATCTAGATTCTACCGCATCTGGCAGGAGGTGACTAGAACATCATGTAACAGAAGGTGAGTGTCACATGTACACAACACACACATATGCACCTACCACACACACCTGCCATATACATGTGCCATACGTACCATACACATACATACACCACACCATATGTACATATATACCACAATCACACACATGTACCACACACATCTACCATATACATATGCCATACATACCATACACATACATATACACCATATGTACATACATACCACAATCACACACATCATATACATATACCACATACACACCACAGTCACATTATATAATAATCACATACATGCCACAGTGACACACACACACACACACACACTTTTGTTTCCTGGAGGAAATAGAGTTTAACCCTCCTATCACAAAGACTTTTTAAAGACAAACTCCATAAGGCCGTATCTCAGCACATCTCCTGAGTATTAATTATGTCTACACTCTTCCACGGGAGGTATGTGGAGAGCCATGGTGGAGACTGGTTCCCTTAGCTGCAGATGTCCTGCCAGTTTGCTCAGTGTGTGTTACTTAATATCAATAAGTGTATTGATATGAACGCTTAATATTTTTATTCTTGGTAATGATATGCCCCGGCAATAATTGCCATAATTACTAGAACCCCTGTCAAGGGAGGCATGTTCAGTCTGAGAGGTGATCCTCGTCAGAGCGGCTGGCAGCTGGGCCTGGAGAATGGAAGTGAGCTGCCTGGTGCTGAGGCAGCTGCCGGGTTGTCGCTGTGCATGAACACAGTCGGAACCCCTAGAGGTCACATGCTGCAACGTCAGTAGACGCCATTTATCCTTCAGAAGTGAAATCTCACGTTTTCTAGGATCTGAAGCATGGCCTTAAGGAGAGAATTGGACTTAATTTTTACAGACCCAAAGAATTGAGTTGAGTGATCAGCCGGTGGCTGCCTGAGAGGCGTCTCTGAGGAACTTACGGTGGTCTGTAGCACTTACACGTAGGAAAGATCATGGAGTTTTGGGACAAGCTTACCTAGACCCCAGCTGATTCTCTCACCTATAATCTCGTTGCAGAGAGCACCTGCCTGGGGAAAGGGGAGCACTAGGTTTTGTTTTGTTTTTTTTTTTTAATTGGACATAAGTAAAGTTATTTGGGAAGAGGGACTTTGGTTGATAAAATGCCCGACAGGTTGCCAGTAGGCAAATCTGAGGGCATTCTCTTGATTAATCATTGATGTGACAGGGACCGGTCTTCAGCAAAATAGTACCTACCATTTCTGGGCGGGTGGTCCTGAGTTCTCTAAGAAAACAGGCTGGACAAGCCAGTAAGGGGGACTCCTCCATGGCTTCTGTTTCAGTTCCTGCTCCAGGCCCCTCCCTGTCTTACGTTCTCTCCAAACTCCCTTTTGTCACAGCTGGTCACTCACCACACGTGGTGGCCACACCTTTGCTGTTGGACATGACAACAAAACCAGAGTGAAGTTTTGTTTCTTTCTTCATGGTTTCCTGGGTAGTTGAGCTATGATTTTTCTCCCCTAGTTGAATTTTTTTTGCCTTTTGAATGGGAAGGAAGCACATTGGCTTTTTATATCTAAATTGGTAGCATCGCAGTTTGAAGGCTTTGGGACCATCATTGAATAATCTGAGTATTGCGAAACTGTAACAGTTAATTTGATATTCAAGGTGGCTGTTAACTGCCACATGGGCAGATGGCAAATCTGGACCGCAGCATGGTTCAAGTCTCAGGAAGGATGGACAGGGATGGTGTGCATCGCGGCACAGTGTTTGGAACAGTTTGCAGTTTATTTTTATTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAAACACTCCAGAAGAGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGACTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGACATCTCACCAGCCCCCAGTTTGCAGTTTAAAGTGTATGGCTGTCTCTATGAGGGGACCTGTCTTTCATTGAATGTTCATCGGCTGCTGACCCCTGGCAACTGCGAGAGCCACGGTGCTGTTGGGTGAGCACAAGGCTACCACTGGCCGCTTTGGCTCTTCATGCCCGCTTAGGTCTAAAACAAAACCCCTGGTCTGAGTCTGTTTAGCACTTGATCGTGAGAAGCGCCCGATTGGAGTCTGACCACATGGTCTCTGAGGAGGCCATTGTCCGTTTCACATGTGTGGCAAGAAACCTCCAGACTTCTGGTTCTGCTTCCCCGGGTCTAAAGTGAAGTACGGGTTTCTTTAAAATGAATTGGAAAAGGGAAGCCAGATCATTCTACCTCTCGCTGAGGACTGAACTCACTGGTGTGACTCTGGGTGCTCTGGTGGGGCGTCTGTCATCCATCCTCCTTAAGAAACTATCTTCATTGAATATAAACGTTTTAACTATGTAGACTGTGAACCCTGGCTTAGCCCCCTTTGTCATCTCATTCCTGATATTTTGATAGATAAATATAGAACAAAGGAAAAATTAGAACTTTTTTCTTCATGTATATTAATGAATGAATGCTGTATGGGGTGTTTCTAAATTTAAGTGTGAGTATATCCTGGTAAACCTATGTTCAGATAGAAATGTCTAAATCAAAAAATATATTTAATTACTGGACAAACTCACTGCAAGTTAAAACATTAGCTAAAACTATGGTAAGTCAAAGCCATCTGTCTATAACACACAACATGAAGCTTTGGTTCTCACTCACACACACACACACACACACACACACATTGTAGAAATGCCAAATAAAGCTATCTAGTGTCTTTAAGTGCATACTAAGCAAGCGTTTTTAGGAGCAATATTTCCATGAACTATATTTGAAAGCGACCTCCTCCCGTATTGTATAACCACATGCAGACCTTCATAGGATGACACCAAGAGTAAGTAAGCTTTTCCCGCCTCTGGTTTGCAG
Seq C2 exon
GTTGCAGATCTGAGCATGGGTGACCTGCTCTTGCACACCAGCGTCATCTGGCTGAACCCACCCGCCTCACTGGGAAAGTGGAAAAAGGAGCCAGAATTAGCAGCCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489:ENSMUST00000114124:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(7.4=35.0)
A:
NA
C2:
PF0016924=PH=PU(24.1=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types