RnoINT0150916 @ rn6
Intron Retention
Gene
ENSRNOG00000021569 | Tiam1
Description
T-cell lymphoma invasion and metastasis 1 [Source:RGD Symbol;Acc:1307455]
Coordinates
chr11:29944256-29950114:-
Coord C1 exon
chr11:29949996-29950114
Coord A exon
chr11:29944365-29949995
Coord C2 exon
chr11:29944256-29944364
Length
5631 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTCCCCCCTCTGCTTTGCAGGTC
3' ss Score
11.28
Exon sequences
Seq C1 exon
TGGCCATCAAGACTATGAACAAGGTTGCCAGTCACATCAATGAGATGCAGAAGATCCACGAAGAATTTGGTGCTGTGTTCGACCAGCTGATTGCTGAGCAGACAGGAGAGAAGAAAGAG
Seq A exon
GTGAGGAGTGTTGTCATCCCCACTCCCCTACCCCCAGAAGCATGATGCTCTTTTTTTTGTGAGGTGTAATTGTTTTCATTGGCTGGTGTTGTACAACAACACTTTTCCTCAGGAAATACAACACAAATACCTCAACTCAAAAAAAGGGCCCCCATGATAGACCACTGTACAGATACCACCAAAATCTAGTTTGGTAAACCAGTGAGTTTATTGGGGTCACTTACAGGGGTGGGAATGAGGGGTTACTCTTGGAGCAGAAATAACTCAGATTGCTGCATCATCAAAGCCCACCCAGTGTGGTGACAGCTCACAAAAGCTGGGAACCTGGAGCACACTGCACAGCCTACAGGTGGCTCAATAGGTTGGACAGTGTCCTTTCTAAGGGACTCAGTTGATCTAAACCTCTTCCAGGCAGCTCAGCTGGTTTCTGCTTCTTCCAGAAAGCTGGTGTGGTCTGACACTATTCATTGCATCCTGACTTGGCTGAGAGTGACTCTTAGCTCTTTTTTTTTTTTTTTTCTTTCTCTGGGAGGAGGGGTGCAGTGAATCCTGTCAGTTTCAGGGACTTCCTGAAGCTGTTTTGAGTTATTTAACTTCTGTCTTGAAGAGCTTCCTTGGAGATGGAATACTTCAATCTTGAAGAAACTGCTATACAACAGGACTCTTATCTTTGAAGTCCACCTGTCATAGTTTCTTTTCCTGTTGCTTTGAGGGAATACTCAGACCACAGCACCTGAAAGGGGGCTTATGTTGGCTCACAGTGCAGGGTAAAGTCTGCCATGACAGGGGAGTTGCAGTTACAGATGCTGGTCACACTGTGTTGTAAGTCAGTGAGCATTACTCACATGCTGGTGGTCAGCTCACCTTGCCTGTTTTCCAGTACAGATCCCTGCCCATGGTTAAGATGAACCTTCCCACCCCTTATAAGCATTCTCCGAGGCCAGCCTTAACCTAGACAGTTCTTCACAGGATTCCCTCAGGTGTGCCTCCTAGGCATCGAATTGACAGGTTCAAGGCTACACATGAATCTTCACTTTTACCTGAGCTGTTTCTTTGTAAACATGCATCTGATGATCTGCTCTTGGCCTTTGGTTTTCATTTGTACTGCATGAGGATACGAATACCCTTACCCAGCATGGGCTGTTCCTATGAATTGAAGTGTGAATCTGAGTCTTCAGGTTAAGATATCTAGTATTCATCAAATACCAGCCACATTGCTGGTACTTCATAAGTGATTGTTCAGGGCATGTTGGTTCCAGTGACAACAATTTGTACTGTACCCAAAACACTGCTTAAAAGCAGCAGTCACAGCTAGGCAAAGGTGGTGCACACCTTTAATCCAGCACTTGGGAGGCAGAGAACTCTGTGAGTTCGAGGCCAGCCTAGTCTATCTACAGAGTGAGTACCAGGACAGCCAGGGATACAGAGAAACCCTGTCTCAAAAACCAAACCAAACCAAAGACACAGCCAAACACACCCAAGAAAGGCTTAGAGTGAGTGAAGACTCGTGCCTGTGTTGAAAATAATGTTGGTGATCCTGAGGTGAATTGTAAGGATGGGATTTTACCTGCAGCCCTCCATGTCTGGATGCTCCTAGGTTGGTCTGAAGAATATTCCACCTGAGGGAGGAGAGGTGGGTGTGCTTCTGCAGTGATCAGTAGGGCGAGAGGAAAGCTGGAGAAGTTTGCTTGCTGACTGCAGAATGCTCCGCCCTCACAGATACAAAGGGCTACTACCCAAGTCTTTGGTTCTTTTAAGGACATATTTTTATTTTTTTATTTTTTTGGTTCTTTTTTTTTTTGGAGCTGGGGACCGAACCCCGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAGGACATATTTTTAAATCCGTGCCTTTGTGGGGCGTGGATGTGGATACCAGTGTTTGGAGGTCAGAGATCAGCTTGCCAGGATCTATTCTTCCCTTCCACCAGCTTGTGCCTTCAGCCACTGAGCCATCCTTCTAGCCCCAGGCCAATCTTCAAGTCAGTGAAACAGGACAGGTCTTCAGACTGTCAGAAAGATATCATTTAGAAGGTGGTGAAGGGAAGGCAGGATAGTTGTGGAAAAACGATGCCTGAGAACACCTAAGCCCTGGGATTTATACACACACAGTAAAGAGCCCTCGGGGCAAGCTGTGACTGGAGACTGAGTTTTCTACAGCTGGAGGACTATAGTGAAGGCCACTTTTAGCTTAGACATAATTTGCATAACTGCCACCCTCACCTCACAGAGTTGGGATGGCTTCAGAGCCCCCTGCAGCACTAGGACCTGAGAGCCTTGGGAGGTGAACCTTTCCAACTGTGTGACAGACCAGCAGGACACAGAGTGTCCTGAGCCCAGAGGCAGTGACTTTATGTATCAGGGTTTAGGAAAGACAAATGCTATCGCTCTGGAATATGTATTTACTCTGGGAAGACATTTGTAATAATAATTCTAAAATCTCCCTAAAAAAAAGTTAAGAAAAAACTCTATAGTCTCAGAGCACGGCTGGCATGGCTAGCCAGCTCAGTGCTGGGGGCTCCCAATGCCCTTGATTCGACAAGAATAAAACCCCCGGGGAGAGCCAGCCTTGGCGGTCATGGCAAGATCACTTAAGTGTCCACTACCATTGCGGCAATGTGTGGGATAGTGACAGGCGGGTACCCAGGTTCTCTTCTCAGCCTCATGGGGTTGATTCTTGATCCAAGTTGTTTCTCTTTTATGGGCAGCATCCAGTAAAAGCCTAGACTGAGGTATGAGCAGTTAGTAAGCAGTTAGGAATATTGTTCACGGCTGCAGATTTCTGCTAACATAGCCACATCCTAGGGACACAGGTCACCCGCATCCTGTCCTGCAGCCACCTTTCCTTGGGATGTGACTGAAGAGAATACGCTCACAGAAGACAAAGCTGCTAGGCAAATATTTTAACGATAAACCTGGACCTTCGGTTCTCCCGAACCTCCCCTGTTGTACCTTGTGGAACTTATCTGGAGCCCAGAGACCGCCACTTTTGCCCAGCAAATTAGAAGCAGCCAGGGGGTGTGTTTCCCTTGGTGGAGGGCCTCCTGAGAATTAATTAGGTGTGTACTCTTCCCTGGAGGAATGTGGGGAACGACGGTGGAGACAGTTGCCTGAGCTGCAGATGTCCTGCGGGTTTGCCCAATGTGTGTTACTTAACATCTGTAAGTGAATATTGACATGAATACTTAATATTTCTGCCCCTGGTAATGATATGCCCCAGGGATAATTACCGTAATTATTGTAACCCCAAACAAGGGAGGCAAGACATCTCCTCTCTTCAGTCCCGAGAGCTAATACCCATCGCAGCGGCTGGTCTCTGTGAAGCTGCATGATGTTGAGGGGACTGCCTGGTTGTCGCCATGCATGAACGCAGTAGGAACACCTTGAGGTCATACGCGGCAGTAGAAACCATCCGTCCTTCAGAAACGAAATCTCAAGTTTTCCAGGGTCCGAAACATTGCCTCAGGGAAGAGGGAATTGGACTTAGCTTTTGCAGACCCAAAGAATGGCCGGTGGCTGCTGAAGAGGCGTATCCGCGGAACTTACAACGCAGGAAAGATCGTGGAGTCCTGGGACAGACAGGTTTACATAGACCCCAGGTGATTCCCTCACCATAATCATTGCAGAGGTCACCCCACAGCAGGGGAAGGGGGTGCTAGTTTTTAAAACGTGACACAAATAGAATTATTAGGGAAGAGGAGGTTCAGTTGATAAAATGTCCCTGGCAGATTGCCTGTAGGGAAATCTGAGCGCGTTCTTTCGATTAATCGTTGATCTGACAGGGTCCAGTCTTCAGCTGAGTTGTACCTACTGTTTCTGGGTGGGTGGTCCTGAGTTCTGTAAGAGAACAGGCTGGACAAGCCATACATATGAGCACTCCCCCATGGCCTCTGCTTCAGTTCCTGCCTTCAGGTCCCTGTCTGATGTTCTCTCCAAACTCCTTTTCATCATAACTGGTCACTTACCACACGCGGTGGCCATGCCTCTGCCGTTGGACATGACAGCAAAACTAGGGTGAAGTTTTTCCTTCTTCACAGTATCCTGAGTAGCTGAGATATGATTTTTCTCCCTCAGTTGAAATGTTTTGCCTTTTGAATGGACAAGAAGCACAGCACCTTTTTATATTTGAATTGGTAGCATCACTGTTCACAGGCTCTGGATCCATTATTGAATAAACCTAGTATTGCGCCACTCTGATGGTTGATTTGATATCCAAGATGGCTGTTAACTGGCAAACGGGCAAGGGGCAAATACAGTTTGAGTGCTCTGGACCCCAGGATTGTTCGAGTCTCAGGAAGGATGGACAGGGATGGTCTGCATCTCGTCACGGTATTTGGAATGGTTTGCAGTTTTAAAGTGTACGACCGTCTCTTTCTGGGGACTTCTCATTGAATTTTCATCGACCGTTGACTCCTGGCAACTGAAAGAACCACAGTGCTGTCAGCAGCAAACACAAGGCTACCATCGGCCTCTTTGGTTCATTGTACCTGTGAAGGTCCAAAATTAAACCCCTTCTCTGAGTCTGTTTAGCACTTGATCTGGAGGAGAGCCCGATGGGAGTCTGGCCACGCGGTCTCTGAGGAGGTCACTGTCCGTTCCACACATGTGTGGCAAGAAATCTCTGGACTTCTGGTTTGGCTTCCCCGATTCTAAAGTGAAGCAAGGTCTTCTTTAAAAGGAGAGCTGGATCATGCTACTCCTCACTGAAGATGGAGCTCACTTGTGTGACGCTCTGAGTGTCCCGGGGGGCGTTTGTCATTGGCCACCATCAATTTCTCCTTAAGAAATTGTCTTCACTGAATATAAAAGTTGGTTTTATAAACTGGACGTCACAGATCACCCTGTGAACCCTGTCTTATCCCTCTTTGTCATCTCATTCCTGCCGTTTTGATAGACAAACATAGAACGAAGGAAAAGTTAGAACTTTTTTTTTTATACCCATACGGTTTTTGGTCATCTAGAAGATTCCTGAGACGTGTCATATGAATTAACAGATTTTTTTCATTAAAATTTCATATTATTTCCAGGTCAAACAAGGCAAATGAAATGACATTACTTGGCATTCTTAGGTATTATGATATTTACAGCTCAGGTGGGGCCGGTGTTCACCGACAGTAAAGCGTGTCTTTAAAATGGGGTGCGTCATTTTAAAACTTCATGTATGAATGGATGAATGCTGTGTGGGGTGTTTCTAAACTTAAAGTGAGATTGTATCCTGGTAAACCCATGTTCAGGTAGAAATGCCTAAATCAAAAAATATATTTAATTAATGAACAAACTCACTGCAAGTTAAAACATTAGCTAAAACTGTGGTTAAGTCCAAGCCATCTGTCTTTGCACACAACATGAAACTTTGATTCACACACACACACACACACACACACACACACACACACACACACACACACTCTGTAGAATTGCCAGATAAAGCTATTTAGTGTATTTAACTGCATACTGAACAAGGGTCTTTAGGAGTAAATATTTTCATGAACTGTAATTGACAGCGCCCTCCCGTATTCTAAAGCCGCGTGCAAACCTGCCTATGGACGGCACCGTGAGTAAACCTCCCCCCTCTGCTTTGCAG
Seq C2 exon
GTCGCGGATCTGAGCATGGGTGACCTGCTGTTGCACACCAGTGTCATCTGGCTGAACCCACCCGCCTCGCTGGGAAAGTGGAAAAAGGAGCCGGAACTGGCAGCCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021569:ENSRNOT00000046486:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(7.4=35.0)
A:
NA
C2:
PF0016924=PH=PU(24.1=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]