RnoINT0150936 @ rn6
Intron Retention
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44426534-44427883:+
Coord C1 exon
chr1:44426534-44426652
Coord A exon
chr1:44426653-44427774
Coord C2 exon
chr1:44427775-44427883
Length
1122 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
3' ss Seq
TGCCTGTCTTTACGATGTAGGTA
3' ss Score
8.55
Exon sequences
Seq C1 exon
AAGCTCTAAAGGCCATGGAAAAAGTAGCCAGTCACATCAATGAGATGCAGAAGATCTACGAGGACTATGGGACGGTGTTTGACCAGCTGGTGGCAGAGCAGAGTGGCACAGAGAAGGAG
Seq A exon
GTCTGTGGGGGCTTTGGACTGAGTGAGCAGCTTCATGCCTGGGTGGACGAGCTTAGGGCGGCTCCCTCCAGAGCAGCTACTTGGTTAGACTTCCCTGGGGCAGACAAAGCCGCTTTCGCTCTTAAAATATAAAGTAATTATATATAGTTCATAGAAATGTAATGAAAAAATGTATTAAAGGAGTCTCACAGTGTAACAGTGTCATGTTAGCATTGTACAAAGGCAATAGAAGCACCACTTAGCCGGCTTCTCCCCACCTCCCTTCTTTCCTATGACAGTGGAGTTGTAGGTTCAGAAACTAGAACCCGGGGAAGGCTGGGCTTGGGAATGGAGGGAGGAAGGAGCCCAGCATATGGGTAAAATACAGGGCTTGTTCCCTTCCGGTCCCCGTTCTGTTTTGGCACTGGGTATGAGTGATTTACCTGTGAACTCAAGCGGACCCAGTGACCAATGACGTCCTGTTCTTTATGCATTTTTCATTTTTTGTATGGTTCTAAATGTAGAACATATGTAAGAAGTAAAGAGTGGCAGGAATTGAAAAGAGACAGAGCACCCCCCCCCCCATTTTTAAATTTAGGTCAGTTGGGTGTATTTTATTAGCAGCCCTATGTGGTTTATCGACCTGAAGTAAACACTAACATGGACTCCTTAGATTAGCGTGGCTGCTGTGGCAGCATTGCCACCTATGTAAGTGTGTACTAAAGCAAACCACCCCCTCCTATTAGTTAACAGTCCTGAAATCCCAGCTATTGGGAATGCCAAGGCAGAATTGCAGTATCAAAGCCTGCCCATGTTTCAGGGTAAGTTCAAGGCCAGCCTAAGAAATTTAGAAAAACCCGGTCTCAAAACAGAAAATAAAAAGAGGCCCAGGCCGAGGATGTAGCTCAGTGGTGACACTCTGGTCCAGCAGGCAGGAAGCCATGAATCATCCCTGTTGCTAATGGAGGTGCAGCTTGATAAGCTCACACTTACAGACTTCCACCTCTTCACACTGCTGATGGGGACTTTGTAAGTAAAACATGTACATTTTAGCAATGGGCACATGTAATACAACTCTGTGTCTAACATCAAAGAATTCATTCCGGGGTTTCCACATCTTTGTTGCCTGTCTTTACGATGTAG
Seq C2 exon
GTAACAGAGCTGTCCATGGGGGAACTTCTGATGCACTCTACAGTTTCCTGGTTGAATCCGTTCCTGTCTCTGGGAAAAGCCAGGAAGGACATTGAGCTCACAGTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728:ENSRNOT00000065386:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(7.4=35.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTAAAGGCCATGGAAAAAGT
R:
ACACTGTGAGCTCAATGTCCT
Band lengths:
224-1346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]