BtaINT0149691 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001527 | TMEM213
Description
Bos taurus transmembrane protein 213 (TMEM213), mRNA. [Source:RefSeq mRNA;Acc:NM_001040513]
Coordinates
chr4:103275347-103277590:+
Coord C1 exon
chr4:103275347-103275421
Coord A exon
chr4:103275422-103276289
Coord C2 exon
chr4:103276290-103277590
Length
868 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
3' ss Seq
TGCCCTCTCTTCCCCGCCAGACG
3' ss Score
10.38
Exon sequences
Seq C1 exon
AAGCAAGCAGCGGCAGCAACTCAACCTCGACCGTCCACCATCCAGAGAATCTTGAGACCCTGGAGCAGTGCCCCA
Seq A exon
GTAAGCTTCTCCTGGCAATTGCCCTAGCTCAGGGCTCATCTCGGAACAGGGAGGGACACTGAAGCCTCCTCACTTTCTGTTCATTGGCACTGAGTGGCTGAGCGCCTGCCTGGCCCTCTCGCACCCCTGTGGTTTGTTCACAGCCCCAGAACCGTCTGCAGGGCACGTCTACAAAGCTCTCTTGGCCATGATCCCCATGTAAGCTCACACTCTGGTGCAGTTTGGCTTTAATGGCTCATCCTCAGGACAGCAGTCAAAGACCCCCTGACTTTGAATGCTTATAGAAGTTTGGGAGTGGAAACATCCTAAACATGAGCCAGTCCAATTCCTGCCCAATGCGGGAGCTTCATTCTCGTACCTGTTGCATTTTTCTGTTCATCTTCCACTTGAAGACTTGCAGTACTAAGGAGCCTAGTGCTTCATAAACAACCACTGTGGTGCATGTCTAATTTATAGGAAGTTTGCTTTATTCTAAGTTTGGCTCCTTGATTCTGCCCCCACTGAATGACCACATGTGCTTACTTCTGGACACTAACAAGGGAGAGTAACAGGCAACAATATGTAGAGGCTACAAATGTGGCTTTGGACTCCTACAAACATGGGTTTGCGTTCTAGTTCTGCCATCTCGTGACCCTGGGCAGGTGACAGCTTCAGTTCCTGCATGTCAAACAGGAGGAATAACTGCCTATCCACTTGGTGAGGAATAAATAAGGGAAGTGTGTAGAGCTCTTAGCACAGTGCAGGGCGTGCCTTAGTAAATGGTGCTATCCTGTTATTACTGGTCTTGATGGTATGAATATCAGAGAATAGCCTTGGGGGAAGGGAGGCTGGGGTGACACTGTCCTTCTTGCCCTCTCTTCCCCGCCAG
Seq C2 exon
ACGTCGACTTCTGCCCACAAGCGGCCCGGTGTTGCCACACGGGAGTAGATGAATACGGCTGGATCGCGGCGGCTGTTGGTTGGAGTCTCTTGTTTCTCACCCTCATCCTGCTCTGTGTGGACAAACTGATGAAGCTCACTCCAGATGAGTCTAAGGACTTGCAAGCCTGAGACTTAGAACACTAGTCCCAAGAATGTCAATCACCAAGTTGTGGGTAATAGCAGGAGGGGAGAGCGCTGATGTGGTTTCCGATATTTCAAAGTCCGTTCACCCCTTTTTGTTTGTTTGGAGTTTTGTGGTTTTGTTTTGTTTTTTTGGCCATACGAGGCGGCTGGTGGAATCTTAGTTCCCTGACCACGGATCAAACCCGGGCCTTGGCAGTGGAAGCTCAGCATCCTAACCACTGACGACCATGGAAGTCCCAAAACCTTGTTATCCTCATACTCTTTAGTTACTTTTAAAAAGGAAAGGAGACAGGGATCCAAGGAAGACAAGACCAGTGCTCCCAACACACCTAATTTCAAAATGTACTTGGGTCCTTTATAATCTGACATTTCCCTGATTGACTCCTTTGATTGTATTTTTGTGTGGGGAGGGGGGAATTGCTTGTATTTTGACCATCGCTTTCTTCTGCGTTCCAAGTATGTGGTACACAAGAAACATGAACTTCAGTCTTAAAGTCACCCCATTCAAAACAAAACTCAGAACCTTCTTACCAAAAACAAGTGGTTGTGTTTTGTCCCTTATTTCAGTCAAGGGCATCACTGTCATTTCAAAATGTGAGAGCCACCTTGGCTGCTTCCTTAGTCCCACGTGCAATGCTTCCTGGGCTCTTGTTCTTCCTTTGACACGTCCTCATATCGAGCCTGCCCATTCTCCTTGCCGGCACCCTAGGTCTGGCCCTCGTTACCCCATCCCACCACCATGTCAGGAATCCTTCACTTTGTTCTCACTGCCTTCAGGATCTGCCCTCCACCCCCTAGCTTGTCCCTCCCCTCATCCCAACATCTTCCACTTCTTTGCTGCCATTCCCTCTGCAGGGGTGGCTGCCTTCCACCTCCACCCCCAGAATGAAGGCCATTCCTCAAAGTCCAGCTCTAATGCTTGCTCTGCCTTCAAACTTCTAGGCTTGTCTTCTGGGGACCAGGAGTTGGTGGTCTTTGGGTACTTGTGTGGTGCCCTGAGCACAGTCACTGTGAACAACAGGCCTCTTCACAATCAGCTTGTACTGCCTCATGCTCCAGTGTATAAAAAGCTCTTAATGTTTGTCCAATGAATGAATGAATAAACAAACAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001527:ENSBTAT00000001999:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151921=TMEM213=FE(30.1=100)
A:
NA
C2:
PF151921=TMEM213=PD(66.3=96.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAACTCAACCTCGACCG
R:
ACAAAAAGGGGTGAACGGACT
Band lengths:
343-1211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]