HsaINT0168956 @ hg19
Intron Retention
Gene
ENSG00000214128 | TMEM213
Description
transmembrane protein 213 [Source:HGNC Symbol;Acc:27220]
Coordinates
chr7:138486072-138490769:+
Coord C1 exon
chr7:138486072-138486143
Coord A exon
chr7:138486144-138487644
Coord C2 exon
chr7:138487645-138490769
Length
1501 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
3' ss Seq
TGCTGTCCCTTCCCCACCAGACG
3' ss Score
8.83
Exon sequences
Seq C1 exon
AAGCAAGCAGCAGCAACAGCTCAAGCTTGACCGCTCACCACCCAGACCCTGGGACCCTGGAGCAGTGCCTCA
Seq A exon
GTAAGCTTCTCCTGCCAACTGCTCTAACCCCAGAACTGGCCCTCAGCCTGGGAGGGAAACAAAGGCCTCCCCGCTTTCCGTTGATTGGTGTCAAGTGGGCAAGGGCCTGCCTGGCCTTCCTGTGCACCAGTGTGGTTTGTCCCAGAACTATTTGCAGAGCAGGTCTGAAAGGCTTTCTTGGCTCTGATCCCCATCTAGGTGCACAATCTTTGACACAGATTGCTTTAATGACCCATCCCAGGTCAGCAGCTAACAATGCCCTAGGTTCAAATGCTTGAAGAAGTTTGGAGGTGGAAAGGCCATAAGAAATCATCTAGTCCAACTTCCACCCAATGCAACAGCTTGGTTTTGGCGTCCTTGGCATACATATTTCTTCTTCTTCTATGCACGTTTTTCCTCTTCTTGCCTACTTCTAGCCACAAGGCGCTCAGTAATTCATAGAGCAACCACTATTATGCATGTCTAGCTAATAGAAAGTTTTGCAGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCATTTTCGGAAGATGAAGCAGGTGGATCACCTAAGGTCAGGAGTTTGAGACCAGCCTGACCAATATGGTGAAACCCTGTCTCTATTAAAAATAGAAAAAAATTAGCTGGATGTGGTGGCATGCGCCTGTAGTGCCAGCTACTAGGGAGGCTGAGACAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCTGTGAGCCGAAATTGCACCACTGCACTCCAGCCTGGGCAACACAGTGAGACTCCCTCTCAAAAAAAAAAGAGAAAGTTCCACTTTATTTTGTCTGGTTCCCTTTATCCTGCCCTCATTGAATGACCGAATGCATTAACTTAGGCACTTAAAACGAAGGATAGGCTGGGCGTGGTGGCTCATGCCTGTAATACCAGCACTTTGGGAGGCCCAGGTGGGTGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGCCAACATGGCAAAACCCAGTCTCTACTAAAAATACAAAACATTAGCTGGGTGTGGTGGTGCGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGAAGGCAGAAGTTGCAGTGAGCTGAGATCATGCCATTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAAAAAGAAAAAAAAAAAAAAGGAAGGGGTATTAGGGAATAATACATAGAGGTTAAGAGTATGGCTTCAGAGTCCTGCAGACTTGCGTTTGAGTTCTTCTGCCATCTTGTGATCTTGGGCAAATTACAGCCTCAGTTTCTTCATGTAAAATGGGAATAAAAGTCGCACCTGTCGCTTTGTGAGGAAGGCATAAGCTAACGTGTAAAAGCACGCAGCACAGTGCATGGCACGTAGTAGGCCTCATCAGTGTCAGCTACCGTGCTGTGATTGTTCTGTTAATATTAATGGTAGAGAAGCCTGGGCAGGGCTGGTGGTGCATGCCGTCGTCCTTGCTGTCCCTTCCCCACCAG
Seq C2 exon
ACGTGGACTTCTGCCCACAAGCAGCCCGGTGCTGCCGCACAGGAGTGGACGAGTACGGCTGGATCGCGGCAGCTGTTGGCTGGAGCCTCTGGTTCCTCACCCTCATCCTGCTCTGTGTGGACAAACTGATGAAGCTGACTCCAGATGAGCCCAAGGACTTGCAAGCGTGAGACCCAGGCTCGGTGCACAAAATGGTGATCGCCACCAATTTGTGGCTAATGGGGAAGGGGAGTAAGGCTAACATGGTTTCTATTATTTAAGTCATTTTCACCTTTAAGCTTCAGTTACTTTTACAAGGGAAAGAAGAAAGAGCGGGAGAACCAAATAAGGCAAGCCAGTGCTGCCCTTGCATGTCACTCCCAAGGGCCCCTGGGCTGTGCCCAGGTAACTCCTCTCTCAAGATAGTCCCTCTGTAATGTATCCTGTTTTAACCTTTCTTCTAGGCACCAAGGGAGGTGCACAAGAAACTATAAGACTTAGTCTCATCATCAACATTTTCAGAAGCAAGTGCATAACCTTCTCACCAAAACCAGGTTATCTGCTTCTGTCCCTGGCTTGAGTCCTGGGCTTAACTGTCATTTCAGAATCTGAGAATCAGTCAGGTATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGTGGGCAGATCACTCAAGGTCAGGAGTTCCAGATCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGTGCACACCTGTAATCCCAGCTACTTGGGAGGCCGAGGCAGGAGAATCTCTTGAACCTCGGAGGCGGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGCGGCAGAGCAAGACTCTGTATCAGAAAAAAAAAAAAAAAAAAGAATGTGAGGATCAGGTGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGACTGAGACAGGAGGATCACTTTAGCCCAGGAATTCGAGACCAGCCTGGGCAAGATGGCAAGACCTTGTTTCTGTTTAAAAACTTTTTAAAGTTAAAAATAAAAATGTGAGAATCCCCTTGACACTCCCACCATCTTCACCCCCACCTCAGGTCCTTCTCCAGCTCTCCTTCTGGCTTCATCCTGTCTTCCACGGCTCTCCTGTCCCACCTATTCTCCCTGCCGGTGCCCAAGTTTTAGCCTTCACTGCCTTCCCCTAGAACACGCCAGGGATATTGCATTCTGTCCTCACTGTCTTGAGGATCTTCCTCCCCGGCTCATCACTCCCCATGGGCAGCTGCCAGGGTAGGCGCTGTCACCTTCTGTTGACAACAGTCAGTAGCTCCTAAGGACTAAAACTGTTCAGCCCAGCATTCAGCTCTTTGGAGGAGTCCATCTGTCCCCCAGCACATCCAGGAGTAAGGATTCCGACTGGTCCACTCCTCATCCTGGTGTCTTCAGCTTCTCTGCTGCCATGTTCTTTGCTGGGATGGCTGCTTCCCAACTCCACCTCCAGAATCAAGGATATTCCTCCAAGCCCAGCTCGAATGCTTGATCTGCCTGGAGCCTTCCTGGTCATCCTTGGGTGACCTGGAGCTGGTGCTGTTAGAGCACTTCTGCTCTGCCCTGATGTGCAGTTGTTGTGAATGGGCCACTCCATAGTTTATCCTTCCTCACACCCCTGGGGCATAGTACCCTATTCAAGTTTGTCCAATGAGTGCATGGGTGAATTAATGAATGAATGAACAAATGAGTCTTTGCCCTAGACAACTTAAGGTCCTCACTCTGCATTAGGAGCCTCCATTTTTCTCCAGATGGTTGAAATAACCAGCCTCTGAAGGAGCCAATGGTTTGGTCACTGCTCTCTCAGCAAATTACAGTCACTGTCACTTAGCATGGAGAGTGGACGTTGCACATCACTGTGAAACCTTGCAGAGGAGGAGAGGGCAGGTTCATCAGAAGAAAGAAAGGACAAAATGACTCCTTATGAAGCATTTTGTGCCTTCTGTGAGAAAACATGTATTTAGATCAGATAAACTCTAGTCAAAATACAAAAAGGAAAAATGAAAGACCTCTGAAATAGGAACAATCTCTTGAAGAGGCAAATGACTCAAAACTGCTCAGTGGCTCTTTCAGAAAATCTAAGTAAAGTTCCCTGACAACAGAAACTGAAGAGATTGCCTGGTTCATCTTGTAGTCTTCCAAAACAGCAGATAATTTCTGAATCTCAGATGTTGAATCAGTGCAACGGGATGGATTTCTTGTTCCTAAGTGTTAAATGATCACATACATAAAAGAGTCTGAGCCTGAGCAACATAATGAGACCCTGTCTCTACAAAAAAAAAAAAAAGATTAGCCAGGCGTGGTGGTGCACACTGATAGTCCCAGCTACTCAGGAGGCTGAGGGAGGCGGATCACTTGAGCTAGAGAGTTCAAAGCTGCAGTGAGCCATGTTTGTGCCACTGCACTCCAGCCTGGGCAACAAAGTGAGACCCTGTCTGGAAAAAAAAAAAAAAAAAGCGTCTGCATAATTCCTGGTGCATTTTGTGGATATACAATATGAGTATGTGTTCCATGTTTTCAGAAATTCAAAGGAAGCGTTTCCACAATATGTGACGGTTTATTTCCCAAGAGATGAAAAGATTCATTAAGGTGCATGCTTTGATTTAACATCTGCAAACATTTAAAAAATATAACAGTGTGTGACGTAGCAGTGAGAGTACTATCTTTTTTTAAAAAGGGAAATTAAGATTTATTTCTGGCCAATGTGAACAGAAATAAGTCACTTTATCTCACTGAGCACCAATTTTACACGTGGAAAATAGAAGAATTGGACCAAATCAGCAGTTTCAAGCTGAGTTGCAAAAGTTCATGGAACCATTTCAGTCGCTTCATGGAATCGGGGTAGGCATGAGGCCCGTTGTTCTTTCAACCTGAGCCGCATGGCTCTTGTGTCTTTAAACCTTGTGGTAGGATTTTTTTTTTTTTCTGCTTTAATAAGTGAAGGGTCAGGGCACCAGTTGGTGTCTGAGATGCCCTCCAGTCTGGGGAACCCCGTAGATGCTTAGACTACTTTGAACTGAAGTATGTGCAGTCTGCCATCTCACATTAAAATGTAGGCATTTTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214128-TMEM213:NM_001085429:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF151921=TMEM213=FE(70.6=100)
A:
NA
C2:
PF151921=TMEM213=PD(66.3=96.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGACCCTGGAGCAGTG
R:
TGCCTTATTTGGTTCTCCCGC
Band lengths:
356-1857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)