GgaINT0112289 @ galGal3
Intron Retention
Gene
ENSGALG00000024435 | TMEM213
Description
NA
Coordinates
chr1:58376319-58376735:-
Coord C1 exon
chr1:58376719-58376735
Coord A exon
chr1:58376489-58376718
Coord C2 exon
chr1:58376319-58376488
Length
230 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
CTTCATTTTTTCTCTTCCAGAGG
3' ss Score
10.43
Exon sequences
Seq C1 exon
CAATGGAGGGTGCAGTG
Seq A exon
GTAAGGGGACCAGCTTAGGTGTTTGGCCAACTGGGATGACTAAGTCTTGAAGACACATAGATGAAACTGAATATTACCACCCTTGAGCCAGGCTTAGGGGAAATATGCCCAAAGGTAGAGTGACAGGCCATGGGGCAGATTGTGAAGTCACCATCTCACCTACTATCTAGCAAAGAAAACCTGCTCTGTACTTAGCCTCCCATCAGCTCACTTCATTTTTTCTCTTCCAG
Seq C2 exon
AGGTGGACTTCTGCACTCTAGCAGCCGTGTGCTGTCCGACTGGTGTCGACGATTACGGATGGATTGCAGCGGCTGTTGGCTGGAGCCTCTGGTTTCTGACTCTCATTCTGCTCTGTATGGAAAAGGTCATGAAACTCCGGCCTGACGAACCCAAATATTTGGTAGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024435:ENSGALT00000041348:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151921=TMEM213=FE(7.1=100)
A:
NA
C2:
PF151921=TMEM213=PD(64.7=96.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]