RnoINT0152544 @ rn6
Intron Retention
Gene
ENSRNOG00000013616 | Tmem213
Description
transmembrane protein 213 [Source:RGD Symbol;Acc:1588740]
Coordinates
chr4:65806220-65807365:+
Coord C1 exon
chr4:65806220-65806288
Coord A exon
chr4:65806289-65807195
Coord C2 exon
chr4:65807196-65807365
Length
907 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
TTCCTGCTCTCCCCTGTCAGACG
3' ss Score
8.87
Exon sequences
Seq C1 exon
AAGCCAGCAGCGGCAACTCAACCCTGAGTACACACCACCCAGACCCCGGGACCCTCGAGCAGTGTGCTA
Seq A exon
GTAAGTTTCCCCTGTCAACTGCCCAGATCTTTGAGCCATCCCTGGATCTAGGAAAGAAACTTGGGCCCTTCTCTGTCCACTAATCCGTGTCAGGTGGCTCACTGACAGTCTGGTCTTCCTGGACAGTGGAGGAGGGGGAATGTCCCAGCACTGTTCACAAAGCTAGCTTGGCTTTGATCAAAATTTAGTCTCATGCTCTTTTGCACAGGTGGGTCTAATGACCAGTAGCCAAAGGGGAAATGTAGTGTTTTAGGGGTGAAAAGCCCATTGAAAATAGCTTCTCCAACCTCGGCCCAAAGCAGGAGCTGGCTTGTGGACTCTTCCCCTATCTCTAGTCATCCTCTTGGCATGTTTCCAAGAGCAGGATGATCAGAAAGCACAGGAATCTCCACCACATGTGTCCAGTCAACGAAAGGTTTTGCTTCATCTTAACTCTGATCCCCCCCATTATCCCGTCCTCATCAAATGGCCAACTGCACTTACGTCTGTGCACTTAGAGCCGGAGAGGGAGCAATAATAACTACCTAAGAGGCCAAGAGCACGACTTCGAAATCTACAGGCTTGAATGTGGGCTCTGCCTCTGCCGTACTGTGATCTTGGTCTTCTTCAGTTTGGGATTCCTTACATGAAGTGGGGATAATAGCTGAACCAGCAAAGGGCTGGAGTGTAGGTCATATCCTCATTCAGTGCCCCAGGTTCAGTACCTAGCACCAAAGCAGTGGTAATAACTTCCCTGTTTGTTAGCTTGACTGTGTGAAGTAGCAAACATGTAAGGATTTAGGATATGCTTAACAAGTGGCAAGTGCTTGTAAACGTCAGTTGCTTCCTGTGTTCTCGAGAGTTCTAACTTGAGAGGGAGCAGGCGTGGCTGGTGTCTTACAGTCCTGTTCCTGCTCTCCCCTGTCAG
Seq C2 exon
ACGTCGACTTCTGCCCACTAGCCTCCCTGTGTTGCCGAGCTTCTGTGGACGAGTATGGCTGGATCGCTGCGGCGGTTGGCTGGAGTTTCTGGTTCCTCACCCTCATCCTGCTGTGCGTGGACAAACTGATGAAGTTAACTCCAGAGGAGCCCAAAGACCTGGCAGCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013616:ENSRNOT00000018331:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151921=TMEM213=FE(28.0=100)
A:
NA
C2:
PF151921=TMEM213=PD(67.1=96.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGCAACTCAACCCTG
R:
TCATGCTGCCAGGTCTTTGG
Band lengths:
232-1139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]