BtaINT0150483 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57260021-57262408:+
Coord C1 exon
chr1:57260021-57260192
Coord A exon
chr1:57260193-57262139
Coord C2 exon
chr1:57262140-57262408
Length
1947 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
CTTCATTCCTTTTGTACCAGGCT
3' ss Score
6.36
Exon sequences
Seq C1 exon
GCTGCAGCAGCAGTTCCCCCACCCTCCACCGCATCATCGGGGGCACTGACACCCAGGAGGGGGGTTGGCCGTGGCAAGTCAGCCTCCACTTCGTTGGATCTGCCTACTGTGGTGCCTCAGTCATCTCCAGGGAGTGGCTCCTCTCTGCTGCCCACTGTTTCCATGGAAGCAG
Seq A exon
GTAGAGCATCTCAATTCTTACTCTGACGTGACCACAGACCACATAGCTGCTCCGACATTGTGGGAAGAAGCTCACATTTGGATCCATTCAATCAATCAATTCAGTTGGTGACTGGAGTATGGAGATCCCTATTCAGGGTGTGAAGGCAACGATTCTGTATCCAGTTTCCAGTGTGGTGGTGGGGAGTGTTCCCACACCCCCGAGCAATTGTCTGACACCAGCTAGGTGTCCTGTAATTCAACTCAGTTCTGACTTTGTCTACCCAGATAGACAGATTAAGCACTTTAGGGGCTCAGTCTAACAAATCTACTCCCCTCCCCCCAATTCAGACACCAGTAGAAAGTCCAGGTTGTCACCTGCACTTTTGACTGACCGGCTATAGAGTGTAGGTTCCAGTGACCCCCTCCTTGGATTTTACTAATTTGCTATAGCAGCTCACAGAACTCAGAGAAACACTTTACTGGCTGGCTTGCCAGTATATTATAACAAGATACAATTTGGGAACAGCCTGATGGAAGACATACATAGGGTGAGGTATGAGAAAGAGTGCAGCTTTCCATGCATGTACAGTTTCACTCCCAATCTTCACATGTCTACCAACCTGGAAGCTCTCCAAACCTTCTGGGCTTTTATGGAGGCTTCCTGACACAGGCACAATTCACTGAATCATTGGTCACTGGACACAGATTCAACCTCTAGCCCCTTCAGCCCTCGTTGCAGTCCCAAAGTAACCTCAGTAACAACAAAAAACACCTTGGTCCCTCTCATCACTTAGGAAATTCTATGAGTTTTAGGAGCTCTGTGCCAGGAATGGAAGGATGACCAAATGTATGTTTTTTATTATAAATCACAATATCACAGAGGAGGATCACAAACAAGTCCTTTAGGGTAATTGTCGGGAGGGCTGTGTCTGCCCTTACCAATGGGATTATCGTGGGCCAGACGTTCTCCCCGCTAAGGGTGAAAGGAAAGCTCAGAAAACAACTTCACTTAAAATGTAACCTTAATTGGAACCAGTTTGAATCCTAGGTACAAAAATATATCAGTTATTTCTCACTTAGAATTTTTAAAAGTATTTCAATGAATTTATACAGTTAGAGTATTTGTTTCTCCTGGAAATTATAGGATTCATGTTAATGACTGAAATGGCTATGCTTCTGTTCCATCGCTAGTCTTTTATGTAATATATGACCCTTAATACTCCCCTGGGTCCCTGTACCACAGGTGGGATTAGGGAACAAGCACTTTGGGATCTGTCCTTACTTTTCTTCCAAAGCGTCCACATTTTCTTCACCCCACCAGAGCAAGGCTGCTATCTCTTTGCTGGAGATAAGAAACCCCAGATGGAGATTACAAAGCCCTCATGACTTCATGCCAGTCCACTGTGGGGCTCATAGGGAGTGGGGCCCTGTGAACAGTCAAGCTTGAGCAGTTAGAACAGCAATCTTTAAGGCTTCTGGTAGTTTGCAAAAAGAAATCTCCTTAAATTCCTGCTTGAAACACTTTGATTTCTAATCTGTCTTGGTATCACTTGAATTTGGTAAAAGGATCCCCAGATCACTGTCTTACTGGCCCTGTCTGTCTCTGTCAAATACCACTGTCAGCATGAATAGGGAGAAGGTACCAAATAAATTCCAGTCACTAACAATCTTGACTTGTGGGTGGTTCCTGAAATACCGATGGCAAGAAAATTTCCAGCATGTCCTTAGAATTCACTGAGGAAATGTTCTGGAACCCAGCTCTCATTTGCCAGCCCTACTCTACCTTACTTCATTTTCGGTTTTACTAAGGAGACAAGGGAGGCTCAGAGGCAGAGTCAGTTACTACAATAGGGAGTGAAAGTCAGACCTCCCTTCCCGCAGCCCCTCTCTCTCCATGGAGTGCTCTTTCCAAACCATATATGGTTCTACAAGCCTCTGACTTCTTGCTTCATTCCTTTTGTACCAG
Seq C2 exon
GCTGTCTGATCCCACACCGTGGACTGCTCACCTTGGCATGAATGTGCAGGGGAATGCCAAGTTCATCTCCCCAGTGAGAAGAATTGTGGTCCATGAATACTATAACAGCCAGACCTTTGATTATGATATTGCCTTGCTACAGCTCAGTGTTGCCTGGCCTGAGACCCTGAAGCAGCTCATCCAGCCAATATGCATTCCTCCTGCTGGCCAGAAAGTGCGCAGTGGAGAGAAGTGCTGGGTGACCGGCTGGGGGCGCAGGCACGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065:ENSBTAT00000020053:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=79.3)
A:
NA
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCAGCCTCCACTTCGTT
R:
GGTCACCCAGCACTTCTCTCC
Band lengths:
342-2289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development