GgaINT0119260 @ galGal3
Intron Retention
Gene
ENSGALG00000015389 | E1C7W0_CHICK
Description
NA
Coordinates
chr1:91912874-91913502:+
Coord C1 exon
chr1:91912874-91913051
Coord A exon
chr1:91913052-91913233
Coord C2 exon
chr1:91913234-91913502
Length
182 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
GTGTTATTGTTTCTGAGCAGGCT
3' ss Score
7.24
Exon sequences
Seq C1 exon
GTTGCGGCAGCAGCAAGAATGGCAATCTCATCTCTCGGATCGTGGGTGGTACCAACAGTAAGGAAGGTGAATGGCCCTGGCAGGTCAGCCTCCATTTTGTGGGAGCTGCATACTGTGGGGCATCAGTGATATCAAAAGAATGGCTTGTATCTGCAGCTCACTGCTTTCAAGGGAGCAA
Seq A exon
GTAAGCAGTCTTCCCTCCTAACCCTGTCCCAGATATTGCTAGTGTCCTGAAACACCTTTAGCTTCCAGTCTGAACTGGACTGAAGGATGATGTGCCCTCCTTTTCATGTCCCACTGCTGGAGTAGGTTGTGCATTTTGGAGCATGTTTTGAAGATTTGACATGTGTTATTGTTTCTGAGCAG
Seq C2 exon
GCTGGCTGACCCCAGAGCGTGGCGTGCTCACTTGGGGATGCGAATACAAGGCCGTGCAAAGTTTGTATCTGCAGTGAGACGGATCATTGTCCACGAGTACTACAACAGCAGGAACTATGACTACGACATTGCGTTGCTGCAGCTGAGCAAGCCATGGCCTGATACAATGAGCCATGTCATTCAGCCAATCTGTGTGCCTCCTTTCTCGCACAAAGTCCGCAGTGGTGACAAGTGCTGGATAACAGGTTGGGGCCAAAAGCAGGAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015389:ENSGALT00000024825:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=76.7)
A:
NA
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTGTATCTGCAGCTCAC
R:
CTTTGTGCGAGAAAGGAGGCA
Band lengths:
253-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]