RnoINT0153444 @ rn6
Intron Retention
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60133511-60135216:+
Coord C1 exon
chr11:60133511-60133682
Coord A exon
chr11:60133683-60134947
Coord C2 exon
chr11:60134948-60135216
Length
1265 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
CTTCATTCCTTTTCTACCAGGCT
3' ss Score
7.35
Exon sequences
Seq C1 exon
GCTGTAGCAGAAGTTCTCCCTTCCTTCACCGCGTCGTTGGGGGTTCCGATTCCCAGGAGGGAACCTGGCCATGGCAGGTCAGCCTCCACTTTGTTGGATCAGCCCACTGTGGTGCCTCAGTCATCTCCAGAGAGTGGCTTCTCTCTGCAGCCCACTGTTTCCACGGAAACAG
Seq A exon
GTAGAACATCCTTACCTTTCAGACCTTACATCTGACTTCCAATGATGAAAAGAAATGATCAACTTAGTTGGGCTCACCTTGGGTGGGGGGTAACCAGTTGTGTGCCATTTTTGTTTTGTATTGATATAAAGAAAAAGAGCACAAAGGAAGTACGGAGGCTAGGCAGGTTTTTTTAGGCTGAAGAAATGGAGTCTGACTTTCAAATCATAGGGGCAAACATAAGTCAGTATATGGAATGAGGAGACGAACAGAATTGGACGATGGTTGGAAAGCAGAGAATCCTAGAAAGCTGGGGTTATTACGGAATAGATTCTCTTTTAACTCAGGGTAAAGGTAAAACTTAGAAGAAAAGAAATAACCCCACTTTAAATCTGTCTGAGATCTATTGGGTCTTAGCTGAAACAAAAAAACAATTATTCTAAAATTTTAAATAGAGTATTGCAGTGAAGTTACATAATTTGAGATTTTTTTTTCTGGAACTTACAGGATTAGTGTTAATTACTAAAATGGATCACCGATAAGTAAAATAATTGCTCCAAGCATTATGTTAGCCTTAGATTCTTTGAGTCTCTGGCACATTCATGTAATATCCACTCAGCAGATTAATGAATGTGTTATGGCGACCATGGTTTAGTTTTCTTCCAAAGCTTCCATGCTCTCTGTACCTCTATTCTCCCTGGTTGCTATATTGATTCTGTGGGAGATTCAAACCTTTTAACAGAGCTCCAAGATCCTCTCTGGTGAATTGGGCAAGGCATGATCAACCACTACACTGATCTGTAAAAATTCATGTGGTTTGCAAGAAAGTACTTCATTAATGCCAGCTTAAAGCACTGAAATGTCTAATCTGTTGATGGCCATATTATTTGCATTTAATATAATGCCCCAAACAGTACCTTGGTGTACATTATGATGCTAGCATACATAAAAAGAGGAGAATACATTGATTGCAGCCAACTGTGTTTATGACCTGTGTGTAGTTCATGAGATGTCAGAAGGCAAGAAATATTTGAGATACTTCCTCAAAATACCGTTGAGAGAATGTTCTGTATACAGCTATAACTCACTATTACTACAACAGCTTACTTCAATGCTGTGTCTAGCAAGCAGACACGGGAAGTTTGTGATCCTTGCCATGTTCCTGGACAAGGCCTGGGCTAAGACAGGACCTGGTAGTCAGATCTTCCTTTTCTCATCTTCATGGCTTTGTAGAGTACTTGCTTCCAAACAATTTATAACTCCATGCTTCATTCCTTTTCTACCAG
Seq C2 exon
GCTGTCCGACCCCACCCCATGGACTGCTCACCTTGGGATGTACGTGCAGGGGAACGCCAAGTTTGTCTCTCCAGTAAGAAGGATTGTGGTCCACGAATACTACAACAGCCAGACTTTTGATTATGACATTGCTTTGCTGCAGCTCAGCATAGCCTGGCCTGAAACCCTGAGACAGCTCATTCAACCTATATGTATTCCTCCAGTTGGCCAGAGAGTGCGCAGTGGGGAGAAGTGCTGGGTGACGGGCTGGGGGCGAAGGCATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145:ENSRNOT00000045521:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=79.3)
A:
NA
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTTGGGGGTTCCGATTC
R:
TCTCTGGCCAACTGGAGGAAT
Band lengths:
354-1619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]