MmuINT0162774 @ mm10
Intron Retention
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45660640-45662325:-
Coord C1 exon
chr16:45662154-45662325
Coord A exon
chr16:45660909-45662153
Coord C2 exon
chr16:45660640-45660908
Length
1245 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
CTTGATTCCTTTTCTACTAGGCT
3' ss Score
6.57
Exon sequences
Seq C1 exon
GCTGTAGCAGGAGTTCTTCCTTCCTTCACCGAATCGTTGGTGGTTCTGACTCCCAGGAGGGGACCTGGCCATGGCAGGTCAGCCTCCACTTTGTTGGATCAGCCTACTGTGGTGCCTCAGTCATCTCCAGGGAGTGGCTTCTCTCTGCAGCCCATTGTTTCCATGGAAACAG
Seq A exon
GTAGACCATCTCAATCCTTAACTTTGAGACCATCTGACTTCCAGTTGTGGAAAGAAATGATCAATTTAGTTGGGCTCATCTTGGATGGGGGTAACCAGTTGTATGCCATTTTTTTTTGAGGTAGCATTGGCATAAAGAAAAAGAACACAAAGGAAGCACAGAGGTTGGGTATGTGATGTGTTTATTAGGCTGAGGAAATGGAGACTGACTTTCAAATTACCAGAGCAAATGTAAGTCAGTATATGGAGACGGCTGGAGAGCAGGGAATCCCAGAAAAAAATGGGGTTATTGTGAACAGATTCTCTTTTAACTGAGGGTAAAGGCAAAACTTAAAAGAAAAAAATAACCTCACTTAAACTTTAAATCTATCTGAGATCTACTAGATCTCAGATGAAACAAAACATCAATGATTCTAAAATTTTAAATGGAGTATTGCAGTGAAGTTACACAATTTGAGATGCTTTTCTTGGAACTTACAGGATTTGTGTTAATTACTAAAGTAGGTCATCGATAAGTAAAATAATTGCTCCAAACATCATGTTAGCCTTAGATTCATTGAGTTTCTGGTACATTCACATGATGTCCGCTCAGCAGGTTAATGAATGTGTTCTAGGGACCATGTTATTAATTTTCCTCCAAAGCTTCCATGTTCTCTGTACCCCTATTCTCCCTGGTTGCTATATTAATTCTGTGGGAGATTAAACCTTCTAAAGGTGCCAAGCCCCTCTCTGGTGAATTGGGCGAGGCACAATAGCCACTACACTGATCTGTAAAAGTTCTGATAGTTTGCAAGAAAGTATTTCATTAATGCCCAACTTAAAGCACTTTAATGTCTAACCTGTTGATAGTCATATCACTTGCATTTAATCTAACACCTCCATATAATAACTTGGTGTATCTACATTATAGTGCTAGAATAAATAAAAAGAGGATAACAAATTAATTGTAGTCTCCTATGTTTTTGAGCTGTGTATAGGTCATGAGATGTCAGAAGGCAAGGAACATTTGAGTTATTTCTACAAAATACTGTTGAGAGATTTTTTCTGGAATACAGCTATAACAAGTTACTACTACAATAGCTTACTTCATTGCTGTGTCTAGCAAAGAGACAAGGGAAGTGTGTGATCCTTGCCATGTCCCTGGACAAGTCATGGGCTAAGGTCTTCCTTTTCCCAACCCCATGGCTTTGTAGAGTACTTGCTTCCAAACAATATATAACTCCATGCTTGATTCCTTTTCTACTAG
Seq C2 exon
GCTGTCTGACCCCACGCCATGGACTGCTCACCTTGGGATGTATGTGCAGGGGAATGCCAAGTTTATCTCTCCAGTGAGAAGGATTGTGGTCCATGAATACTACAACAGCCAGACTTTTGACTATGACATTGCCTTGCTGCAGCTCAGCATAGCCTGGCCTGAAACCCTGAAACAGCTCATTCAACCAATATGCATTCCTCCAGCGGGCCAGAAAGTGCGCAGTGGGGAGAAGTGCTGGGTGACTGGCTGGGGGAGAAGGCATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177:ENSMUST00000114562:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=79.3)
A:
NA
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAATCGTTGGTGGTTCTG
R:
CCCGCTGGAGGAATGCATATT
Band lengths:
352-1597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types