DreINT0021354 @ danRer10
Intron Retention
Gene
ENSDARG00000086161 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr24:21700128-21700694:-
Coord C1 exon
chr24:21700496-21700694
Coord A exon
chr24:21700397-21700495
Coord C2 exon
chr24:21700128-21700396
Length
99 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GTGATCTTTGATGCTTTCAGGTT
3' ss Score
8.64
Exon sequences
Seq C1 exon
CCTGTGGCAAACCCACCCATGTAAAACGTGTATTAGATGGCACCAGCCCTCAGCAGCGTATTGTGGGTGGAGTCAATGCTGTGGAGGGGGAGTGGCCATGGCAGGTCAGCATGCATTTTTCTGGTCAGCTGTATTGTGGAGCTTCAGTCCTCTCTGATGTGTGGCTTATTTCCGCAGCACACTGTTACAGCAAAGAAAG
Seq A exon
GTGAGAAACATCAGATGCATCTATAAATCATTGAAAATCAACATTTAATACATTTTGTTAGTGTTTTCATACAGCATGTGTGATCTTTGATGCTTTCAG
Seq C2 exon
GTTGGCAGATCCACGTATGTGGATGGCTCATTTGGGAATGCTGAACCAGGGCAGTGCCAAGCATGTGGCCGAGATCCGTCGAATTGTGGTGCATGAGTACTACAATGCAAGAAATTTTGACTATGATATTGCCCTCCTGCAGTTGAAGAAGGTCTGGCCAAGCGGACTGGAACAATATATCCAGCCTGTGTGCCTGCCGGCCCCATCCCAAACCTTTACTGAGGGACACCGCTGCTGGGTGACTGGCTGGGGTTATCGTTCTGAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086161:ENSDART00000129558:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=68.7)
A:
NA
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGCAGCACACTGTTACAG
R:
CTTCAACTGCAGGAGGGCAAT
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]