BtaINT0150501 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22458603-22459351:-
Coord C1 exon
chr7:22459215-22459351
Coord A exon
chr7:22458765-22459214
Coord C2 exon
chr7:22458603-22458764
Length
450 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TTCCTCTCTCCCCTCCTCAGGGT
3' ss Score
11.85
Exon sequences
Seq C1 exon
GCTCCATGGCCAGGCAGCTGCAGAAGGCGGCCGTGCGCCTCCTCAGCGAGCAGACCTGCCGCCGCTTCTACCCGGTACAGATCAGCAGCCGCATGCTGTGTGCCGGCTTCCCGCAGGGAGGCGTGGACAGCTGCTCG
Seq A exon
GTGAGCGACTGTGCAACTGAACCGGGGGTCCCCGGGGCCCCACCCTCACGACACAAAGCCCCTCAGCTGCCCGCCCCACCTCCAGTGCACTTCCTCAAACAGAGCAGCTTTCTGCTCTCCTGGAGTTTCCCCTGAACGCCGCCTTGGCGGACACCTCTAGAGAGCCGGGTTCCACCCCACGGCATCCTCCCCCAGTCAGGTAGAGGGGTCAAGAGCAGTGGGGCAGAGGCCATGTCTTCTCCAGGCCCACCAGGCAGGTGTCCACCAATGTCTGCCAGCTGGATGAAAGCTCACCTGAGCACTGAACCCATTTCTCAGATGGTAGTGAGGCTCTCCCGGGGGCAATGACTACAACTTACGTGGGGTCACGGAGGTCAGGCCAGCCCACCCTTGGCTGCTGCGGGGGAAGTACTGCCCGCTCTGAGTACCTTTCCTCTCTCCCCTCCTCAG
Seq C2 exon
GGTGACGCTGGGGGACCCCTGGCCTGCAGGGAGCCCTCCGGCCGCTGGGTGCTCACTGGGGTCACCAGCTGGGGTTATGGCTGTGGGCGGCCCCAGTTCCCGGGCGTGTACACCCGGGTGGCTGCTGTCAGAGGCTGGATCGGGCAGAACATCCAGGAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718:ENSBTAT00000000958:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.3=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATGGCCAGGCAGCT
R:
TCACTCCTGGATGTTCTGCCC
Band lengths:
298-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]