RnoINT0153462 @ rn6
Intron Retention
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11678591-11679857:-
Coord C1 exon
chr7:11679721-11679857
Coord A exon
chr7:11678908-11679720
Coord C2 exon
chr7:11678591-11678907
Length
813 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GAGAACACTCTCTCCTTCAGGGT
3' ss Score
7.89
Exon sequences
Seq C1 exon
GCTCCATGGCGAGGCAGCTGCAGAAGGCTGCGGTGAGGGTCCTCAGTGAACAGACATGTCGCCGCTTCTACCCGGTACAGATCAGCAGTCGTATGTTGTGCGCAGGCTTCCCGCAGGGTGGCGTGGACAGCTGCTCG
Seq A exon
GTGAGTGGAGACAAGGGTTCTTAGTTCATGTATGTAGCCCAGGTTGGCCCGAAGTCCTGCACCGCCACCGTCCTATGAGGCAGTGAGTCCCAGGAATCCTGAGCTCTGGCCGCGGCACACACATTCACCATACCTGGCTTTTTATGTGGGTTTTGGGGTTTAACTTGGGCCCTCACGTTTGTGTGACAATTTTCTGACTCAGCCTGCCCAAGTCTCCCCCAGCCCACCTGACTCTGGGGGCATCACATTTCACAACGTGTAGCTTCCCAACCTCACATCCTACTGGAGGCTCCAGGCAGGGCGACTACTGAGTTTAAGACCAGCTTGCCGGGTAACACATAGATCAGGGAGATCTCCGGGTTCTATGCGATGCTTGCTGTGGGAACGCCAAGACTGAGCACAGATCCCCAGGAATCATAAAGGCCGTGCTTACAGACTACGTGCACTTGTAACTCCATTCGGTACGGGTAGCAGCGAGGGTGGGGGACACAGCTGGGACCTGGCCACCACCCACGTCCAGGTTCACGGAAAGACCCCGTGTCAACAATAAAGATAACCATTCAAGCCTGCCGTGGCCTGACGGCGCACAGCATGCACACGTGCTGGTTCTCGGGACAAGGGCCCGGCAGAGGCGCAGCCAGAGCAAGTAACAAAGCACCTTAGTACTGAACCCATTTCCCACACGGCAAAGGTGAGGCTCTTTGGCCGCTGCTCTCCCACTAAAGGTCCTCGTTAGTGTCCAGCAAAGAGGTGCAGTTGCAGGAATCATACCTGCTCCCAAGGGCTGCAGCCTGAGAACACTCTCTCCTTCAG
Seq C2 exon
GGTGATGCAGGGGGACCCCTGGCCTGCAGGGAGCCATCTGGCCAATGGGTGCTAACTGGGGTCACCAGTTGGGGCTACGGCTGTGGCAGGCCGCACTTCCCAGGTGTCTACACTCGAGTGGCTGCTGTACTAGGATGGATAGGCCAGAATATCCGGGAATGACACCCCCGTGGCCAGCGACCCAGGCATGGACTACAAACACAACTGCTGGCCACCCAACCCACGGTGGGGAGTCGGTGGCGGAACACACATGGGGGTCCGACAAGAACTAGCTGTGACCGTGTATATTGTTCCAATAAACAGAGTCCCTTCTCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429:ENSRNOT00000049221:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTTCTACCCGGTACAGAT
R:
CTAGTTCTTGTCGGACCCCCA
Band lengths:
348-1161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]