HsaINT1044729 @ hg38
Intron Retention
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2425357-2426239:+
Coord C1 exon
chr19:2425357-2425493
Coord A exon
chr19:2425494-2425926
Coord C2 exon
chr19:2425927-2426239
Length
433 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
CTTTCTTCTCTCCCCAACAGGGT
3' ss Score
12.68
Exon sequences
Seq C1 exon
GCTCCATGGCGCGGCAGCTGCAGAAGGCGGCCGTGCGCCTCCTCAGCGAGCAGACCTGCCGCCGCTTCTACCCAGTGCAGATCAGCAGCCGCATGCTGTGTGCCGGCTTCCCGCAGGGTGGCGTGGACAGCTGCTCG
Seq A exon
GTGAGCCCCGCCCCGGCCCAGGGGACCAGGTCCCGCCCAGCCGCCGGGGAGGGCGGGTTCCCGCTGCCACGAAGCCCACCATCCGGGAGCCACCCTCCGGTGCAGGCTTCTCCAGCGGATCAAGCAGGGAGCCTTTTTGGCTCTGGAGGAATTTCCACTCCACAGCCGTTTATTGGGCAACCCACCGCATCCCATCCCCGGGCCTCGGCGGCAGAGCAGGCAGAGGCTGCAGTGGGAGGCACCGTTCCACTCCGGGACCACGTGGCGGGTGTCCATAAATGTCTGCCACCTTTGCATTGAGCCCATTTTCCAGATAGTGAAAATGCGGCTCCCAGGGGAAGTCACTAGGGTCACTCCTAGAGGGGCCAATGACCCAAGGGCTGCTGTAGGGGAGGTACCGGCCTCTGAACCCCCTTTCTTCTCTCCCCAACAG
Seq C2 exon
GGTGACGCTGGGGGACCCCTGGCCTGCAGGGAGCCCTCTGGACGGTGGGTGCTAACTGGGGTCACTAGCTGGGGCTATGGCTGTGGCCGGCCCCACTTCCCAGGTGTCTATACCCGGGTGGCAGCTGTGAGAGGCTGGATAGGACAGCACATCCAGGAGTGACCACCACGTGACTGCCCAGGCCGAGACTCTACGTGAAAGCAACAGGAGCAGCAGGCCACCCAACACCCCACCCCACCGTACCCTACCCAAGGACGGGTGTGGGGGGGCTGTGGGTCATGGGGATGCATTTTGGTACCACCCTTTGTTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297:ENST00000332578:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.3=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGCAGATCAGCAGCC
R:
AAATGCATCCCCATGACCCAC
Band lengths:
358-791
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains