MmuINT0162793 @ mm9
Intron Retention
Gene
ENSMUSG00000059406 | Tmprss9
Description
transmembrane protease, serine 9 [Source:MGI Symbol;Acc:MGI:3612246]
Coordinates
chr10:80360930-80362239:+
Coord C1 exon
chr10:80360930-80361066
Coord A exon
chr10:80361067-80361923
Coord C2 exon
chr10:80361924-80362239
Length
857 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GAGGACACTCTCTCCTTTAGGGT
3' ss Score
7.72
Exon sequences
Seq C1 exon
GCTCCATGGCGCGGCAGCTGCAGAAGGCCGCAGTAAGGGTCCTCAGTGAACAGACATGTCGCCGCTTCTACCCAGTGCAGATCAGCAGCCGTATGTTGTGTGCAGGCTTCCCACAGGGTGGCGTGGACAGCTGCTCG
Seq A exon
GTGAGTGGAGACAGGGCTTCTCTTAATCCATGTTTGTAGCCCAGGCAGGCCCGAAGTCCTGCACCACCACTGTCCTTTGAATCTTTCTGTCTCATCTCCAGTGTGCTGGCAGGATACACATTCGCCACACTTGGCGTTTCACGTGGGTTTTGGGACTTAACTTGGGTCCTCACGCTTGTGTGACAAGCCATCTTCTTACTGAGCCTGCCCAAGTCACCCACAGCCCACCTGACTCTGGGGACATCACATTTCACAACTGCACATTCAGAGAAAACATGTGGTTTCCCAACCCCACATCCTACTGGAGGGTCCAGGCAGGGCAATTATGGAGTTTGAGACCAGCTCGCCCCAACAACACATATACTGATGTGTTTCGGTACAGGGAGATCTGTACTGATGTGTTTTATGCGATGCTTGCTGTGCAAACGGGAAGACTGAGCACAGATGCCCAGGAGTCATATAAAAACTGGTGCTTACAGACTATGTGCGCTTGTAACTCCATTCTGTGCGGGTAGCAACAGGGGGACTAGCGGGGAACTGGCCACCACCTACTTCCAGGTTCACAGAGAGGCCCCGTGTCAGTGGAATGGAATGGAAAACGACAGATAACCATTTAGCACCCTGCTCTGGCCTGCACATGCGCAGCACACACACACACACGTTGTTCCTTGGGACAAGGACCCTGCAGAGGCATAGCCAGTGCAAATAATGAAGCACATTAGCACTGAACCCATTCCCCACAGGGCAAAAGTGAGGCTCTTGGCAGCCTCTCTCTCACTCAGGGGCCTTGTGAGTGCAGTTGCAGGAGTCATGCCTGCTCCCGAGGGATGCTCGTCTGAGGACACTCTCTCCTTTAG
Seq C2 exon
GGTGATGCAGGGGGACCCCTGGCCTGCAGGGAGCCATCTGGCCAATGGGTGCTAACTGGGGTCACCAGCTGGGGCTACGGCTGTGGCAGGCCCCACTTCCCAGGTGTCTACACTCGAGTGGCTGCTGTGCTGGGATGGATAGGCCAGAACATCCAGGAATGATTGCCCTGTGGCTAGCAACCCAGGCGTGGACTGAGAAACACAGCTACGGGCCACCCACCCCACGCTGAGGAGTTGGTAGCAGGCAAACATGGGAGTCCGATGGGAACTAGCTGTGACTGTGTATATTGTTCCAATAAACAGAGTCCTTTCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059406-Tmprss9:NM_001081688:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCCAGTGCAGATCAGCA
R:
AGCTAGTTCCCATCGGACTCC
Band lengths:
345-1202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: