BtaINT0150959 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015650 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
Coordinates
chr16:57816674-57817107:+
Coord C1 exon
chr16:57816674-57816730
Coord A exon
chr16:57816731-57816829
Coord C2 exon
chr16:57816830-57817107
Length
99 bp
Sequences
Splice sites
5' ss Seq
AACCTGACA
5' ss Score
-8.66
3' ss Seq
GAATAGTGTTTATTGATCAGCAT
3' ss Score
0.17
Exon sequences
Seq C1 exon
TGAAAATCCTCAAGTCTGGATGTATAAAGAGATCTATGTCCATGAAACAGCTGAAAC
Seq A exon
CTGACATATGAGATAGGAAAATTATGAGAACAGGAAACTACCCCACCCCAAGCAACGTGGCCACAAGATTTCACTCTGTGAATAGTGTTTATTGATCAG
Seq C2 exon
CATCTTCCTTTCAGACATCGACAGCCCCCAGAACCTGGTGACTGAGCAGGTGACAGAGAACACGGCCACCGTCTCCTGGGCCCCGGTGCAGGCTGTCATCGACAGGTACCTGGTGCGCTACACCTCTGCTGACGGAGACTCCGGGGAGGTTCCGGTGGGGAAGGAGCAGAGCAGCACCGTCCTGACAGGCCTGAGGCCGGGCGTGGAGTACACGGTCCACGTGTGGGCGCAGAAGGGGGACCGGGAGAGCAGGAAGGCTGACACCAAGGCCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015650:ENSBTAT00000020785:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.330
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004116=fn3=WD(100=84.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTATGTCCATGAAACAGCTGA
R:
GTCTCCGTCAGCAGAGGTGTA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development