BtaINT0151416 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003256 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]
Coordinates
chr13:74083737-74088187:-
Coord C1 exon
chr13:74088007-74088187
Coord A exon
chr13:74083837-74088006
Coord C2 exon
chr13:74083737-74083836
Length
4170 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
3' ss Seq
TTCTGCTTCCTCCGGGGCAGGTT
3' ss Score
8.38
Exon sequences
Seq C1 exon
CCGGGAACTGTAGCGCCCCCCACCCCGCCCCGAGTTTACCGGTCCAGCCCCAGGATGGCCCCTATACCCCCGGCATCAGTGGAGGAGCTCCGCACCACCGGCAACCAGAGCTTCCGCAACGGCCAGTTCGCCGAGGCCGCCACACTCTACAGCCGCGCGCTGCGGATGTTGCAGGAACAAG
Seq A exon
GTGCGACCCCGGCCCCCCGCACCCCCGTTTCTCCGCCAGGCCTGCTTCCCCTTCTCGCTTCCCCCGACCCCAGCTACCCGTACCCCGCTCTGGCCCTCTCGGCCTGGGGCTTCCGTTTACCCCGCAGCTGACCGGCCCACCGGGTCTCCCCAGCACTTGCCCATTACTTCCCCCCTCCCCCACCTTGGGCATCCTACAAGAAAGTTCCTTGGCCTTTCTTTCCGCTTTTATTATTATTGTAACGTGGCTTTATTACTGGCCCTTTTTTACTTAATGACATAACAGAGACACATTTTCATGTTAATAGATCTTTTATCACTTTTTATGGTGGTAAAAAACGACATCAAACTTCATCTCTTGTAACTTTGTCGTGCAACAGATCTCTGGAACTTTCTCATCTTGCAGCACAGAAACGCCGTACCCACTAAACTCTGATTACCCCCTCCGCCCGTGGTAGCCACCTTTTTTTTTCTGTGTCAATGATTTTTACTACTTTAGGTATTTAAAATGAATGGGATAATACAATCTTTGTCTTTTGTGACCGAATAATATCTTTGACATTATAAACTGCGTTGTAGCATGTGACAGGCTTTGGTTCATTTTTAAGTTTGCCTGATAATTCCATCGTGTAGATACACCATATTGTCTTTATCCATTCATCCGTTAATGGACATTTGAATTGTTTTCACCTCTTGGCTATGATGAACATGAATGTGCAAGAATCTCCCAAGATCCTGCTTTAATTTCATTTGAATATATACCCAGAAGTGGGATTGCTGGATTAGATCCTAATTGTATTTTTAATTTGCAGGAAAGGAGGGGGCCTCCAAACTGTTTTCCGTAATAACTGTACCATTTTACATTCCCACCCACAGGGCACAATAATTCCAACTGCTCAGCATCCTTACCAACGCATTTTATTTTTTCTTCTTTTGATAGTGACCACCCTGATAGATTGCCTGCTTTTTAACAGTCTTGTTGGACCCCATTCTAATATTCAAGCCTCATTCTGATCCCTGAGGCAACTCTCATTTTCCTCAACTGTACACGCTTTAATTAACATTGTTAAGCAACTGTATGTAATGAGTGTAGAAAGTCCTTTCTGTCAAGGGGCATTTTTTTCTTGTTAATGCGGAGGCCCCAGATGTGATCTTAATTCATTAACTGGGGGATTTTTGCAGAAACACCTGTGGCTGGTCCTTTGTTCTGTAAGTGATATTGATGTTTTTGGTCAGTAATGTTTGTGTAACAAGAAACATGGGCTTCCCTGGTGGCTCAGATGGTAAAGAATCTGCCTGCAAGGCAGGAGACCCAGGTTCCATCCCTGAGAGAAGATCCCCTGGAATAGGACATGGCAACCCATTCCAGTATTCTTGCCTGGATAATTCCATGGACAGAAGAGCCTGGTGGGCTACAGTCCATGGGTCGCAAAGAGTTGGACACAACTGAGCAGCTAACACTTTGGACTTTCAACAAGAAACATATTAGTACATCTCTAGTCAATAATGTGTTAAGATAATGAATATTAAACAAGAACTATGGGGAAATGATCTGGGCTGTGAAGAAGACAAATGTGGTGGTGTGGTAGATTTGACTAGGGAGTTCTTTTATGAAGAGATGGAAGGTAAAGGACAACTTCTTTGAAGAAGTGACATTTGAGGTGATACCTGAATGGTCAGAAGAAGCCAGCTGCATGAAATTTTGTGCTGAGCACCTCAGGTGAAGAAGGCCATAATTAACAAAGGCCCCAGACAGCAGTACCCTGGTGTCAGGACCCAGAGCATATGGGAGCCAATGGAGGGAGTACCAAGACTTCATCAGTTACAAAGACAGGCATTTTACACGGTAGTTCATGGGAAGGAGTTTGGAGTTTATTCCCTAATGGGAAGCTGCTGGAGAGTTTTCAGCAGAGGAATAACGTGTTTTTACCAGTCTTCCCGGCCTCTGGCTCAGTTCAGCCAACAAAGCCCTCTGCCCAAGGCCTCTCTGAAGTGGCTTATCCCAGAGCCTCAGTAGAATTCCTTTTCTGTAGTCCCTCTTTCCCATTGCTTTCCTTCTCTCTCATTTCCTTGGCTAGCATTTGTTGAGTACTTGCTAGACATGATAGGCTTTCTCCCTTTTTTATATCTTCCCACTAACTTACGGGTAAGATGCTTTATAGATGAGGGTTCCAGAAGACTTAAATCCCTTCTTCTGGGGTGACACACTGAAATCAGAGGCAGAATTTGAACAGGGGTTTCTCCAATTCCCAAGTCCAAGTTTTTAATCATTTTGCTGGACTTCTTCCCAAATCCTTTGCTAATTCCAATCGATTTTGTTTGAATTTTTGCAGTTTCAAGCCACTCTTTTGCTGCCTCCCCCCCCCCCATGTTTTTTTTTTCCTAGAACCTTTCTCTGTAGGCCCACCTCCTCATCTCAACTTGTTAAAGTTGCTTTTTTTTTTTTGTATCCTACCCCAGCTGCCTGGAAAAACTTGGCTTTTTTGTAGGGATTTATTCTAGGCCCGAAGAAGAGCCATACTGATATGTCTTCTCAGTTTAGCAGGGGACCAGAATTTGGTTCTGATTCTGCTACTAATTTTCTGGGTAATTTATGGGCAAGTTCCTTGATTTCTCTGATCAATTTCCCTGATCTTGAAAGGAGAGCAGGGAGCAACCTAACACAGTGAACCTTCCACCCAGTCTGTGAAATATCATCTTCATCTGATAGGTAAGCACATGTGATCAGAGGGGATTGAATGACTTGCGCAGGGTCACAGGCTGGATTTGGGGATCTGATGTCATTTCTGCCACACCACTGCTGTTTTCTGAGCAACCATGCTCCAATGACTTGAGATGGGTAGCAAGGTTTGAATACTTGAGCTTGCTCCTCGAGGGCCAGGATGTCTTTTACTTATCTCTATACTTTGCTGTCTCCCTTGGGGTCCGGCAACAAAAGGGAAGACAAGATAATTTTATTATGTTTGGTATTGAATGAAGCAGGTTTTGCATCAATGTGGTAACATAATTAGCAAAGAAGGCAAGCTGCAGAAGGAGAAGCGGTATGACGCCACTTGGGAAAAGTTATTTAAAGGATATTGTGTCTTGCCTGTGAATACCTATATAATAAAGATGGACACACGTGAGAATGTGACATACCCACTTTAGGACTGGCAACTTTTGGGGACCTGGGGATGGGGCAGAGGGGAGAGAGTAGAGCTATTTAGTCATAGTGAAACCAAAAAGGTGAGAGGACTTCCCTGGTGGTCCAGTGGTTAAGCGTCCATGCTTTCACTGCAGGGGGCACAGGTTTCATCTGGGGTTGGTATGCAGCCAAAAATAAATGAACAAAAAGACCCCAAAAAGGTGGGAAGCAAATATTAATAAAATATATGCTGAGTTTAGTGATGGATAGCAAGTACCTATTATACTGTTGTCTATATGTTTTACCACTTTCAAAGGAGAGCTTCTGTTCTGGGAATGGAATCACTGGGTCAACACTTGATAGTTTCCATGTTTTATTTTCATTATGACCCCTGCTAGTGGTTGAAAAATTATTTTTGAAAATGAAAGTCATCATGGCCACAATAAAGGACTTGAGCCTCTGAGATTGCTGAGGATAAAGATGGTGTTTAAGGAAACATCTATGATAATTCCCCTCCCCACGGGATAGCTTGAGCTCTTCCCCTGATTAAGCTCTCCATAGTCCTGCGAGACTGAGAGGTCTTTTCCTTGGCGAAGTCCTCTCTGATTTGACCAGGTAGAATTAGTCTGTTTTTTGTGTCCCCACACTTGTTCAGTCCATTTATCATAGCATTTATCAGATTTTTGTCTTCTTTTTTTTCTTTATTGGATTTTTATGCTTCTTGTAATAAAATTAACACATACACACACCCCCAAGTAGTTACACTGTGGATTTCTTTGAGCTCTTCACTTTGATCTCTGGCCTGGTACCAAGTTCAGTGCATGACTGAGTAGATGAGCAGATGCTTGGTCCCTGTGGATAGCAGGAAGCTTGGTGTTCTTGCTCCCTTGCCAATCCATCAGACCAACATGCACGATGGGGTTACAGTCATCTCTGCTGCCCATTACTAAACCCCAGAGAGCTCAAGGTGTGGAATGCGCCCCCGATGTCCCAAGGCACCCATCTCCCAACCTGTTAATTGTGCATTTTCTGCTTCCTCCGGGGCAG
Seq C2 exon
GTTCTTCAGATCCAGAAAAAGAAAGTGTTCTCTACTCCAACCGAGCAGCCTGCCACTTGAAGGACGGGAACTGCATCGACTGCATCAAGGACTGCACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003256:ENSBTAT00000004220:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.384 A=NA C2=0.162
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(47.4=83.7)
A:
NA
C2:
PF134141=TPR_11=FE(43.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development