GgaINT0010313 @ galGal3
Intron Retention
Gene
ENSGALG00000004110 | TOMM34
Description
NA
Coordinates
chr20:5188868-5189170:+
Coord C1 exon
chr20:5188868-5188997
Coord A exon
chr20:5188998-5189070
Coord C2 exon
chr20:5189071-5189170
Length
73 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CACCGCTGTGTGCCGCGCAGGGG
3' ss Score
6.79
Exon sequences
Seq C1 exon
AGCCCCGCGCGGCCCGGGATGGAGAGCGCCGGCGATCTGCGGCGCGCCGGCAACGAGGAGTTCCGCCGCGGGCAGTACGGGGCGGCCGCGGAGCTGTACAGCCGCGCGCTGGCGGTGCTGGAGGACGCAG
Seq A exon
GTACTGCGGGGCCGGGCGGGGCGGGGCCGGGCTCACCTCACCGCACCGCACCTCACCGCTGTGTGCCGCGCAG
Seq C2 exon
GGGAAGCCGCCGCCGAGGAGCGCAGCGTGCTGCTGGCCAACCGCGCCGCCTGCCAGCTGCGGGACGGCGCCTGCCGGGGCTGCGTCGCCGACTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004110:ENSGALT00000006537:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(47.4=81.8)
A:
NA
C2:
PF134141=TPR_11=FE(43.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]