RnoINT0154395 @ rn6
Intron Retention
Gene
ENSRNOG00000029799 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:RGD Symbol;Acc:1309029]
Coordinates
chr3:160460721-160465143:-
Coord C1 exon
chr3:160464998-160465143
Coord A exon
chr3:160460821-160464997
Coord C2 exon
chr3:160460721-160460820
Length
4177 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TCTTGCCTCCACCTGGGCAGGTT
3' ss Score
7.44
Exon sequences
Seq C1 exon
GTTTACCAGCCCGCCCGGCATGGCCCCCAAAGTCTCGGACTCTGTGGAACAGCTCCGCGCTGCCGGCAACCAGAACTTCCGCAATGGCCAGTACGGCGAGGCCTCCGCGCTGTACGAGCGCGCACTGCGGCTGCTGCAGGCGCGAG
Seq A exon
GTAGGAACCCGCCCCACGTTTCCCCCCGGGCCTGCGTCCTCTATCCGCATCCCCGCACCGGGCCTCACGTTGGCCCAGCCTTCCTGGTTCTTTTCTTCCCCGCATCCAACCGCCGCACCAGGCCCTCCCAGGGCTTGATCCCGCGCTTCCTTCCATCCCTGGCCGCGTAGGCACGACCCCGTCTATCACCACCTCCGTGAGGCCAGTCGGCTGCGGGCCTTAAGGGCACGCATCCGCTGCTTCCACCCGGAAGCTGTTGCGCACTGCTCAGCGGGGAACGCAGGTGGTCCCTGTTTGCCGGCCTCCCGGGATGGCCCCCAAACTCTCAGACTCTGTGGAAGAGCTCCGCGCTGCCGGCAACCAGAGTTTCCGCAACGGCCAGTACGCCGAGGCTTCGGCGCTGTACGAGCGCGCGCTGCGACTGCTGCAGGCGCGAGGTAGGAACCCTCCCCTCGTTTCCCCTCAGGGCCTGCAGGAGTCCTGCACCGGCTCGGCGCCCTGGACCTGGTGTTGATCCAGCCCTCTGGGTCTTTCTTTTCCCCGGCCATCTGCCTCACCAGCCACTCTCACCACGCTCCCGCATCTTCCCCACTTTAGCATCCTTCAAGAAACTTCACTTGGTTCTTTCTGCCTGCTTTTTTTGGGCTTGTATACTAAATTACCTGACCCTTGAGGTATAGCGAGCGCATGGTCCTCCCCTCATGTATTCATTTTACAATTCACTTGATGAGCACCTTTTGTATAGTGACTGAAATGTGGCGAGATGGGGTCCTTTCAAGGATAGAACTTCCTGAGGGCAGTTGTCTTATGTTTGTGAGTAAGTAAACGAGACCTCTGAGATTAGAACTATTAAGACAAAGTAATGCGATAGAGCTGGATCCTTTAGAAAGGAAGTCATGGACGACTTCTCAAGAGATATTTGAGATGTTGATGAGAAGCTCGGTGTCTAATGCATCCCAAGTGCATCAGATAGACTAAGCAGCATAAGCTATTAATGAGAATATTTAAGACATGAAGTAGACAAAACCTTATTGTGTTGGTGCTTTAAACCCTCCAAAGAGTCAGGATCTTATCCCCCTAATCGGAAGAGTTTTAAACAAAGGGAGAGCATATTATCAATGCTCCTAGCCTTTGTCCCGAAGTTCTGACTTGAGGACAGCCTTGAGTATCGTTTTCTTTTTTTTTTTTTTAAATATTTATTTATTTATTTTATGTATAAGTACACTATAACTGTCTTCAGACACACCAGAAGAGGTCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCGGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTTTTTGGTTCTTTTTTTGGGGGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGAGTATCGTTTTCTATAAGTCCTCATTCTCATTTTCCTGACCAGCATTCGTTGTGTGTTTATCTGGGTGCTTGATGTTATCTTTGTTTATCCTCACTATGACGAGTCAACTAGACACCTGTAGATGAGGAGTCCCAAAGAACTAATGGCCTTTCTAGGATTACACAATGAAGATGTTAGATCCAGAATTTGAATGTACATTTGTCGGATTTCTGAATCCATTTTCATTTGTAATCATGGGGTGGGGGTAGTGTGTGTGAAGTGGCATCCCCCTGTGGCTGGAGTTACAGGTGTTATGCGCTGCCTCATATGGCTACTGGGAGCTAAATTCTGGTCTTCTGCAAGATCAATAGATGCTTTAACCCCTCAGCCATCCCTCCAGCCCGAGTCCAATTTTTAATCATTCACTAGAGTAATTCATAAATCCTCCTTTTTAGAGTTTTTATGGGTTGAAGCCATGTATGCATGGGTACACACCCCGTTGTTCTCTCTGGAAATCTTAGGGCTCTTCTCCCTATGTTAGCCCCACTACTTGAAGTTGGTGAGAACACTGTGGTGGCTGTTACCTTCTCAGCCCCCCTCCCTGAGTAAAAGCCCAGAAAAGCTGTGCTTCAGTGTGGGTGTGTTCCGAGACCACTGGAATGGTTGCCCTGTTGTTTAAATTTACCAGATTTTATTTCTGTCCCTACTACTGATTTTCTGTGTGATTGTGTAGGTAATTCTCTTGACTTCTCAGATCTGTTTTCTTGGCCTTAGGAGGAGCACAGGGAAGCCTTGTAGAAGTCTGAGACTCGAAACCTTCAAATGTAAATGCACCCAAGTACTCAGAAGAGTTGAGTGGATTGTGTAGGACGGTCAACTGGAATGAAGTCCTGATGACCTTTCCATACTTGTGCCTTATGGCAAGGATTGTTCCATTTACCTCTGTAGTTTCTGGCCCAAGAGCAGAATGAATGGCTTATAAATACGTTTATTATTCATCGTTAGTGTTGAGTGAAAGCTATCAAGTGTCGCCATGGTATCATACTTCCTGAAACAAGTGCAGGAGGGTAGGCCGGGTGTTGTTCTTGGGAAACAACTTAGTGGTACCAAACCTTCCGTGTTAGTGAAGTGTGCTGAAATGGGCAGGGCTTGAGAATTTACACAGCAGCTTGAGGATTGTGCTGGCCTCCAGAGAAAAGGAGCACAGGGGTAAAGATGAGGATGAGTGGAGCTATAGCCATTTCAGAAGCAAAATGGAGGCCAGCTTCATTCATGTGGAGTGGCTTCCAGGCCCCATGGGGCTACCTAGTAGAAACCTTGCTCCCTAGTAAAGGAATGAATGAGTGAGGGTGTGCAGGTGCCCATTGTCATCCCGACACTCAGGAGGGTGAAGCAGGAAGGTTGTCGGAAGGTCAAGGCTAGCCTTCTCCACGTGGTAAGGTAGAAACCTGTCTGCTCCTGCCTCAGGACTGCTGAGGTTAAGACATGCCACCCTACCAGCAGTTTTTTGTTTTTTGGTTTTTTTTTTTTTAATAAAAAAGGAGGAGGGGGAAAAAGAAACACGGATGGCGTGAATCCTGTAGCTTCAGTACTTTGGGAGACTGAGGCGGGAAAATTGCTATTTCAAGGCCAACCTGGAAAAGGTAGTGAGACCTCACTCAAAGAAAGGTGTTGGAACAACTGATTTTGATAAAATGGTGGATACTGGATGTCATACAGTGTAATGTCTAAGTCAAATGTTTTAGTATACCAAGGAGTTACTTGGTCCGCCCTTTTTTTTTTTTTTAATATTCTGTGTTTTTTACTGTTTTGTGACCCATGATAGTGAGAAAAATATAGTTGAAAATATCTTTAAAATGAAAATCGGGGGTTAAAAGAAAGTACAAAATTAGAGAGAATTGGTGGAGGAGGAGGAGTTAGTACAATTAGAATACAGTTAATGAAATTCTCAAAAAAGTGAAAATCAGGGTCTACTCTGCAGATAAAGGCACTTGCTGAGTTCCTAGGCCCCTCATGGTGGAAGGAGAGAACTGACTCCCTCAAGTTGTCTTCTTACCTCCATTTGCATCCCTTCTTTATGTGTAAGCTTGTGCACACATGCACACACACACACACACACAGAGTAAATTTTAAGAGATGAAAATTGTTAGTCACCATGAGACGGGTAAGAACATTGACTTTAGAGAAATGACTAATGAATAACTCTTTCCTTGATTGAGGTGTCCATAGTCCTGGCAGACCTGGCTTGGTTCTACTTCTCTCCTAAAGGCTTTTCTGACAACTAACTGCTCTCTCGCTTGCATTTCCCTCTGATTCTGTGTTACCCCCTCGTTCAGGTATTTATTATTGTCCTTTTCCTTTTTCTTCCCCCTTTGAGTCGCCATGCTTGCTGTAGTAAGTTAGCCTTACATCTGAGTAATTAGAACATGGTTTTCTCTCCCGTGGAAGCCAGCTGCTTTACGTTTATCTTCTTATCTGGTACCAAGTTCAGTGCTAAAATGAGTGAGTGAGGATGGATGCTTGGTTGCCTGTGAATGGCACAAATCTAGACTTCCCCACTGTCGTGATAAGAATGGTAAATGTGTTATCCCACATGATGTATTCTCTTGGTTAGGCTACAAGACCGCTGCCTCTTCCAGAAGGCTAGAAAGCTCCAAGTATGAGGTGCGTCCCTGTGCCCTCTGACCTCTGTTTCCCAACTCATGCTCTTGCTCTTCTTGCCTCCACCTGGGCAG
Seq C2 exon
GTTCTGCAGACCCAGAAGAAGAGAGTGTTCTGTACTCCAACCGTGCAGCGTGCTACTTGAAGGATGGGAATTGCACAGACTGCATCAAAGATTGCACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029799:ENSRNOT00000040156:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(47.4=83.7)
A:
NA
C2:
PF134141=TPR_11=FE(43.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]