MmuINT1033552 @ mm10
Intron Retention
Gene
ENSMUSG00000018322 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:MGI Symbol;Acc:MGI:1914395]
Coordinates
chr2:164066570-164071169:-
Coord C1 exon
chr2:164070913-164071169
Coord A exon
chr2:164066670-164070912
Coord C2 exon
chr2:164066570-164066669
Length
4243 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TCCTGCCTCCATCTGGGCAGGTT
3' ss Score
8.19
Exon sequences
Seq C1 exon
GTCTGGCCCCGCCCCTCAGGGCCGGTCCACAGTGGGCCTTAAAGGCACGCAGCCCTAGCTTCCGGGTGGAAGCTGTTGCGCACCACTTAGCTGGGAAGTGCGTTGCTCCCTGTTTCCCAGCCCACCCGAGATGGCCCCCAAAGTCTCGGATTCCGTGGAACAGCTCCGCGCTGCCGGCAACCAGAACTTCCGCAATGGCCAGTACGGCGAAGCCTCGGCGCTGTACGAGCGCGCACTGCGGCTGCTGCAGGCGCGAG
Seq A exon
GTAGGAACCCGCCCCACGTTTCCCTCCGGGCCTGCGTCCTCCACCCGCATCCCCGCACCGGGCCTCCCGTTGGCCCAGCCTCCCTGGTTTTCCCTTCCCCGCGTCCAGCCGCCGCACCAGGCCCTCCCAGGGCTTGACCCCGCGATTCTTTCCGTCCCTGGCCGCCTAGCCGCGGCCCGGTCTACCATCACCACCCCCCACCACCCCCAGGCCAGTCGGCTGCGGGCCTTAAGGGCACGCATCCGCTGCTTCCACCCGGAAGCTGTTGCGCACTCCTCGGCGGGGAACGGAGGTGGTCCTTGTTTGCCGGCCTCCCGGGATGGCCCCCAAACTCTCAGACTCTGTGGAAGAGCTCCGCGCAGCCGGCAACCAGAGTTTCCGCAACGGCCAGTACGCCGAGGCTTCGGCGCTGTACGAGCGCGCGCTGCGACTGCTGCAGGCGCGAGGTAGGAACCCGCTCCCCCGTTTACCTTCCGGGCCTGCAGGCATCCTGCACCCGCATCGGCGCCCTGGACTAAGTGTTGATCCTGTCCTCTGGGTCTTTCTTTTCCCCGGGCCATCTGCCGCACCAGCCTCTACCACCACGCCCCCGCATATAGCTAGCGCACCTGTCCGCCCCTCATGTACTCATTTTAAAATTCAGTTGACTTTTGTATATTGACTGAATGTGGCTGGCGAGATGGGGTCCTTTCAAGGATAGAACTTCCTGGGGCCAGTTGTCTTACATTTGTAAGTAAAGGAGACCTCTGAGATTAGAACTATTAATACAAAGTAATGTGATAAGGTTGGATCCTTTAGAAAGGAAGTCATGGGCAACTTCTCAAGAGATATTTGAGATGTCCCTGAGTTGAGTGTCTAATGCATGCCAGGTGCGGAGACCCATCAGATACACTAAGCAGCATAAGCTATTAATGAGACAATTTAAGACAGGAAGTACACAAAACCTTAATTGTGTTGGTGCTTTAAACCCTCCAAAGAGTTGGGATTTTATCCCCTAATTGGAAGAGTTTTAAACAAAAGAACAGCATATTAACAATGCTCCTAACCTTTGCCCGAAGTTTCAGAAGCTTTGACATGAAGACAGCCTTGAGTCCCACTTTCTCTGAGTCCTCATTCTCATTTTCTCTCTTTCCTTCTTTTTTTATCTTAAAGATTTATTTACTATTATATGTAAGTACACTGTAGCTGCCTTCAGACATTCCAGAAGAGGGTGTCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCATAACCTCTGGAAGAGCAGTCAGTGCTCTTACCCGCTGAGCCATCTCACCAGCCCCATTCTCATTTTCTTGACCAGTGTTTGTTGCGTGGTTTTCTGTGCTGGATGTTATCTTTGTTTATCTTCACTATGACCAGATCAACCTGTAGATGAGGAATCCCAAAGAATTCATTGCCTTCCTAGGATGACACAGTGCAGATTGTTAGACCCAGAATTTGAATATAGTCATCTGATTTCTGAATCTGGTTTTATTTGTGGTCATGGGGTGGGGTTAATGTGCCAGAGGTGGCATCCCCGTGGAGCTGGAGTTACAGGTGTTGTGCACTGCCTCACGTGGGTGCTGGAAGCTACACTCTGGCCTTCTGCAAGATCAGTGTATGCTTTAAACCCCTAAACCATCTCTCCAGCCCCCTGAGTCCAAATTTTTAATCATTACCTAGACTAATTCATAAATCCTCCTTTTTAGACCTTTTATGGGTTGAAGCTATGCATGGGTACACACACACACACACACACATCCTGTTGTTTTCTCTGGAAACCCTCTTAGGCTGCTCCCACTATGTCAGTCCCACATCTTGAAGTTGCTGGGGACACTAAGGTGGCTGTTTCCCTCTCAGCCCCCTTCCCTGAGTAAAAGGCCAGAAGCTATGCTTTTGTGTGGATTTATTCTGAGACCACTATAATTAAACAGCCCTGCTGTTTAAATTTGCCAGATTTTATTTCTGTCCCTACTACGGAAATTTCAGTGTGATTATGTAGGTAATTCTCTTGGCTTCTCAGATCGGATTTCTCTGCTCTAAGGAGCACAGGGAAGCCTTGTAGCAAGTCTGAGACTCGAAACCTTCAAATATACATGCACTCAAGTACTCAGAAGAGTTGAGTGGATTTTGTAGGACCATTAACTAGAACCTTTCAGTACTGGCAAGGACTATTCAACTTACCTCTGTATTTTCTGGCCCAAGAGAAGAATGAAAGAAGTATAAATTTATTGTGTTTATTATTCATTGTTAGTATTGAATGAAGGATATCAAGTGTCAACATGGTATCCTACTTCCTGAAGCAAGTGCAAAAGGATAGGCTGTGTGATGCCCCTTGGGAAACACTTTAGTGGTCCAGTTCCTTATGCGTTAATGATACGCACTAAAGTGGGCCGGGCTTGTGAGCATTGTGCTGGCCTCCAGGGACAAAAATGAGTATGGATGGAGTTTTAGCCATTTCAAAAGCAAAATTGAGGCCAGCCTGATGTATGGAGTGGCTTCCAGGCCCCTTAGGGCTACACAGTGAAACCTTGCTCCCTAGGAAAGGGTGTGGAGGTGTCTACTTGTTATCCCAGCACTCAGGAGGCTGAAGCAGGAATGTTGTCAGAGGTCAAGGCTAGCCTTCTGCACAGACGATGGAACTCTGCCTGCCCCTACCTCGGGACTGCTGAGGCTAAAGATGTGCCACCATACCAGCAATTTGTTTTAAGTTTTGTTGTTTGTTTGGTTTTTTGTTTTTAAAGGAGGTAGGGGGATGGGTAGGGGGAGAAACTATGATGACATGAAGTCTTGTAGCTCCAGTACTTTGGGAGACTGAGGCAGGAAAATTGCTAGTTCAAGGGCAACCTGGAAAAGGTAGTGGGACCTCACTCAAAGGTGGGTGGAGGTGGGAACAACTGATTTTGATAAAATGGTGGATGCTGAATGTCATATCAAGCATAAGCTATGAAAATAATGTCTAAATCAAATATTTCAGGAAGACCTTTGGTCTATATACCTAGGAGTTACTTGGTCCACACTGTTTTCTTATGTTCTGTGTTTGCTGTCTTGTGGTATTTTAGGACCCATGCTAGTGAGTAAAATGTAGTTGACAGTATCTTTAAAATGAAAACAGGGGTTAAAGGAAAGTGCAGAGTTGGAGAGTGTGGAGGCAGAAGTGAGCCTAGGGGAAGTTAGAGGAGGAATTAATACGATCAGAATACAGTTAATGAAATTCTCCAAAAAGTGAAAATCAGGGGTCTCAGCAGGCAAAGGCTCTTGCTGAGTTCCTAGGTCCCGCGTGGGAGGAGGAGAGAACTGACTCCCTCAAGCTGTCGTCTTCTTCTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTGCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCCTGCGCCATCACGCCCGGCTCAAGCTGTCATCTTACCTCCATACGCATTCCTCCTTCTGCATGTGAGCTTGCATGCAGGAGCACAAGCGCACGCACGCACGCACACACAGGAGTAAATTTTAAGAAATGAAAGTGATTATAGTCACAGTGAGAGGTCTAAGCTTCTGTGCCTGGGTAAGATCATTGACTTTAGAGAAGTGACTAATGAGAAACATTATGGGGTTGTTCACATTTCTCTATTGAGGTGCCCGTAGTCCTGGCAGACCTGGCTCGGTTATATTTTTCTGGTAAAGGCTTTTCTGACTTAACTCTTGCTCTCTAGCTTGCTTGCATTTCCCTCCGACTCTGAGTTACCCCCTCGTTGAGGCATTTATTATCGTCCTTTTCCTTTCTCTATTGAGTCCCTGTGCTTTCTGTAATAAGTTAGCCACGCAACCAAGTAATTACAACAGGGTTTTCTCTCGGGCAGAAACCAGCTGCCTTATGCTTATATTTTTATCTGGTACCAAGTTCAGTGCTAAAATAAGTGATGATGGATGCTTAGTTTCCTGTGAATGGCAGAAATCTAGACTTCCCCACTGTGGTGATAGGAATGGTAAATGTGTTATCCTATATGATATATAAGCCTGGTTAGGCTACAAGACTCTGCTGCCTTTTCCCAAATCCTAGAAAGCTCCAAATATGAAGTGCATCTCTACGCCCTCTGACATCTATTTCCCAACTCATGATCTTGCTCTTCCTGCCTCCATCTGGGCAG
Seq C2 exon
GTTCTGCAGACCCCGAAGAAGAAAGTGTTCTGTACTCCAACCGTGCAGCGTGCTACTTGAAGGATGGGAACTGCACAGATTGCATCAAAGATTGCACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018322:ENSMUST00000109384:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(47.4=83.7)
A:
NA
C2:
PF134141=TPR_11=FE(43.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types