BtaINT0151643 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013510 | TOR2A
Description
Bos taurus torsin family 2, member A (TOR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001083476]
Coordinates
chr11:98426949-98428335:-
Coord C1 exon
chr11:98428070-98428335
Coord A exon
chr11:98427125-98428069
Coord C2 exon
chr11:98426949-98427124
Length
945 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CTCTCGCCTCTCTCCCACAGAAG
3' ss Score
10.55
Exon sequences
Seq C1 exon
GTCTGGAGTGTGACCTGGCCCAGCACCTGGCGGGCCAGCACTTGGCCAGGTCGCTGGTGGTGAAGGCACTGAAGGCTTTCCTGCAGGATCCAGCCCCCACCAAGCCGCTGGTCCTCTCTCTGCATGGCTGGACCGGCACTGGCAAGTCCTATGTCAGCTCCCTGCTGGCGCACTACCTCTTCCGGGATGGCCTCCGTAGCCCCCACGTGCATCACTTTTCCCCGGTCATCCACTTCCCCCACCCCAGCCACTTGGAGCGCTACAAG
Seq A exon
GTAGGCTGGTGGTGTCCCGGCCCACCCTCTGCCGGCACTGTAGGGTGACTCCCCTAGAGTGGGAGTGAGTCCTGAGCCCAGAGAGGGGAATCCCTTGCTCCAGGCAACACAGCCAGTTACAGCCTCAGCCCTTAGGACCCATCCTAAACAAAGCTGAGGGTGCTATCACCTGGCAGGGAGTTCTTGATTTAATGCCTGGGAGCCAGTAAAGTACCTGCGTGCCAGGGTTGTTGTGAGGGACGTTCGACTATAGAATCACAGGTGTTATTTATTGAGCACTTATCTTTGCCAGACAACCTGCATTATCTTCTCTCAGTAAAGCCCTTAGAGTAAGGGCTTTTGAGGCTCAGAGTAAGTGCTCAGGAAATATTAGCTCTATTGTTGTTGATTGCAAGGTACTGTCCAGGCTGATCTGTTTCAGCTGTCACAACTCTGTTGTGAAGGTTCAGGGAGCAGGAAGGTGCGTTCCCCTTTTCTAGAAAGCAAGACGTGTCAGGAAGGAGCCCCCTGACAATGCAGGTGTGAGGCCTGGCTCTGCGTCCCTGTTCTCTTGTTGACTTGCTGTGTGAGCTTGGATTACTCTCTGCCCCTCTCTGGGTCACAGTTTCATCATCAGCCTCATTAAGGGATCGGTGCTCTTTGGGAGACCATATCTTCCTGAAAAGATGAATTCTTTTTAATATTTATTTTTATTTATTTGGCTGCATCTGTCTTAGCTGCAGCATGCGTGAGCTTTGATCTTTGTTGCAGCACATGGGATCTTTAGTTGTGGCGTGTGGGATCTAGTTCCCTGACCAGGGATCGAACCTGGCCCCCTGCATTGGGAACGCTGAGTCTTAAGCCACTGGCCCACCAGGGAAGCCCCATTAATTCTTGTTTTGGGAAGGAATCTGGAGTTGGGGAAGCAGCTCCAGGTGCCCTCATACTCTCGCCTCTCTCCCACAG
Seq C2 exon
AAGGATCTTAAGAGCTGGGTGCAGGGGAACCTCACTGTCTGCAGCCGCTCCCTCTTTCTCTTCGATGAGATGGACAAGCTGGCCCCAGGCCTGATAGAAGTCCTGCGACCTTTCCTGGGCTCCTCCTGGGTTGTCTACGGGACCAACTATCGTAAAGCCATCTTCATCTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013510:ENSBTAT00000017963:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.8=100)
A:
NA
C2:
PF063096=Torsin=PD(15.9=33.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGTGAAGGCACTGAAG
R:
CCGTAGACAACCCAGGAGGAG
Band lengths:
353-1298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development