RnoINT0154645 @ rn6
Intron Retention
Gene
ENSRNOG00000022514 | Tor2a
Description
torsin family 2, member A [Source:RGD Symbol;Acc:1359111]
Coordinates
chr3:11796799-11797861:+
Coord C1 exon
chr3:11796799-11797064
Coord A exon
chr3:11797065-11797685
Coord C2 exon
chr3:11797686-11797861
Length
621 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TCCTGTCTCTACCCTCATAGAAT
3' ss Score
8.03
Exon sequences
Seq C1 exon
GTCTGGAATGTGACCTGGCTCGACACCTAGCTGGCCAGCATTTGGCCAAGGCCCTGGTGGTGAAGTCATTGAAGGCCTTTGTACAGGACCCAGCCCCCAGCAAGCCATTGGTCCTTTCCCTGCACGGCTGGACAGGCACTGGGAAGTCCTATGTGAGCTCCCTGCTGGCGCAGTATCTCTTCCGGGGTGGCCTTCGCAGCCCTCATGTCCATCACTTCTCTCCTATCATCCACTTCCCACATCCCAGCCACACTGAGCAGTACAAG
Seq A exon
GTAGGCTGGATGTGTGCTGGGTCCCTTTTCCCTGTCCTAATCCAGAGAGGGCTCCAAAGCACACAGCCAGTTGGAGTGAGCGCTCAGAACCTATTAGGAACAGAGCTTGCTCTCTGTGATACAGGGGTGGTGGCGTCATTGGTGCCTGTGGGTCAGAGACATCAGGAGAGAGATGGGGATTATGGAGGGCAGATATTACTTACAGAGTACCTGTGTCTGTGTTCTCATCCTGTTAAGCTTTTAGCCCCAACTTGGTGCTTGGGAACAACTCCCTGGTGACTGCCAGATTTGATAACTATTGTTCCTGATCTGTCTTAGCTGTCAACACTGTGGGGCAAGTCTAACACCCCCACCCCCACCCGCTGTCAGAAGTCACTAGCTGTCATGAACAGATAATTGGGGCACATATATTTATACCTCTCTTTTCCTGTTGACTGGCTGTGTGATCTTGGACAAATCTGCACCTCTCTGAACTACCTTTTTACCATCTGTCTCAAGGGGTTGGTGCTGTCTAGAAATGTAGATCATGTCTCTTTGGAAACTTTTCTTGGCTTCGGAAGAAGTTCGGGGTTGCGGGGAGTGTCTTGGACTCCTTTGGAATTCCTGTCTCTACCCTCATAG
Seq C2 exon
AATGAGCTCAAGAGCTGGGTCCAGGGGAACCTCACTGCCTGTGGCCGGTCTCTTTTCCTCTTCGATGAGATGGACAAGCTGCCCCCTGGCCTGATGGAAGTCCTGAAGCCCTTCCTGGGCCCTTCTTGGGTTGTGTATGGGACCAACTATCGCAAAGCCATTTTCATCTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022514:ENSRNOT00000030694:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.8=100)
A:
NA
C2:
PF063096=Torsin=PD(15.9=33.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTGACCTGGCTCGACAC
R:
GGGCAGCTTGTCCATCTCATC
Band lengths:
345-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]