GgaINT0124462 @ galGal4
Intron Retention
Gene
ENSGALG00000026424 | TOR2A
Description
torsin family 2, member A [Source:HGNC Symbol;Acc:HGNC:11996]
Coordinates
chr17:4923996-4925442:+
Coord C1 exon
chr17:4923996-4924261
Coord A exon
chr17:4924262-4925266
Coord C2 exon
chr17:4925267-4925442
Length
1005 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGGTGGATACTTTTCCTAGGAG
3' ss Score
3.83
Exon sequences
Seq C1 exon
GTCTGGAGTGCGAGCTGGCCGTGACCCTGGTGGGGCAGCCCCTGGTGAGGCGGCAGCTGATGGAGGGACTGAGGCAGTTCCTGGAGAAGCGCAGCCCGGAGAAGCCCCTCGTCATGTCCTTCCACGGCTCCACCGGGACGGGGAAAACCTTTGTGAGCGCCATGCTGGTCCGGCACCTCTTCCCCGAGGGGCTGCAGAGCCCCCACGTCCACCAGTTCTCCCCCATCGTGCACTTCCCGCACGCGGAGCACGTGGAGCGCTATAAG
Seq A exon
GTGAGCGCGGCCGTCCCGGTGCTCCGTGCGCGCTCGGGCTGCCCCCGAAGGCAGCAGCGCCGCAGCTCCGTGCTGCGCCCCGTGACGGACATGGAGCAAAGGCTCCACGCAGCGGCTGAAGGATCCCCGGCGATCCGCTCTGCACTTCTCTTTCTCCAACAGCCGTTCTTGCTGTCGTTTTCTCCCTCTTTCAATATTGACACGGCCCTTTGGATACGCAGCCAAAGCGTTGCGCTTAGTGCCTTTCACCTGAGATTGTCCCTTTGCTTTGCAGACAGCTCAATAGCTGGGAAAAACCTCTGTGTTGCTGGACTCGATCATTCCCTCCTCGCCCAACAAGGAGCTCCAAAGCACAGCTTAACCTATGGCTCCTACAGCTCCAAATCCAAAGGTGGAGGTTTTCTAAATGAAACCTCAGCAGTGGGGAAAACCAGCAAACCTGGGTGTTTTCTGTCCGGGTGTTTGGAGGAGTTGTGTGTTCTTTTGTGCCATTAGAAGAAATGTGCTCAGTAGGGTAAAGCCTCGTGCTGGGTAAAACGCTGCAATTAAGAGTTCTGCATACATCCAGGAGAGCTGAGCGTTTGTGTGTGGGTTGGCACCGAAGTCACTTCAGCTGTAGTAAGGAGAGCTCTTCTCACTCCATGCAGGCAGTTTTGCACCAAAAAAGGAGGTGGCAACAAGCACATCTCCCTCCCAATAGCTGGGAACTGTAATGCAATGAAAGGGAAGAACGTAGGGAGCTGTAGGAGGCTGAATACCCAGCTTTAGTTTGCTGCCTCCTTCTTACTGCTTTAAAGCTGCAATAGAGGACCTGTAATGGGCTAATAAATGGCACAGATAAGTCACTGCGCCAGGTCCAGGACAAAGCAGCCTGCCTCAGGGCTGGCTGTTTTTGCTCTGAGTAGGTGGTGCTGCATAGTTGCTTCTGTGCTTCAACTCAGCCCTTGCACTGCAGTAGCTCAGGCCTCCCTCACTGCTTTGTGGTCTGGTGGATACTTTTCCTAG
Seq C2 exon
GAGAACCTGAAGCACTGGATCCAAGGGAACCTGACCAACTGCGGACGGTCGGTCTTTCTCTTTGAGGAGATGGACAAGATGCACCCGGGCCTGATTGATGTGATCATGCCATTCCTGGGACCCTCCTGGGTCGTGTATGGGACCAACTACCGCAAAGCAATCTTCATCTTCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026424:ENSGALT00000043220:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(75.9=100)
A:
NA
C2:
PF063096=Torsin=PD(17.2=33.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCTGGAGAAGCGCAG
R:
TGCGGTAGTTGGTCCCATACA
Band lengths:
346-1351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]