GgaINT0124462 @ galGal3
Intron Retention
Gene
ENSGALG00000004996 | TOR2A
Description
NA
Coordinates
chr17:5553652-5554852:+
Coord C1 exon
chr17:5553652-5553671
Coord A exon
chr17:5553672-5554676
Coord C2 exon
chr17:5554677-5554852
Length
1005 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGGTGGATACTTTTCCTAGGAG
3' ss Score
3.83
Exon sequences
Seq C1 exon
AGCACGTGGAGCGCTATAAG
Seq A exon
GTGAGCGCGGCCGTCCCGGTGCTCCGTGCGCGCTCGGGCTGCCCCCGAAGGCAGCAGCGCCGCAGCTCCGTGCTGCGCCCCGTGACGGACATGGAGCAAAGGCTCCACGCAGCGGCTGAAGGATCCCCGGCGATCCGCTCTGCACTTCTCTTTCTCCAACAGCCGTTCTTGCTGTCGTTTTCTCCCTCTTTCAATATTGACACGGCCCTTTGGATACGCAGCCAAAGCGTTGCGCTTAGTGCCTTTCACCTGAGATTGTCCCTTTGCTTTGCAGACAGCTCAATAGCTGGGAAAAACCTCTGTGTTGCTGGACTCGATCATTCCCTCCTCGCCCAACAAGGAGCTCCAAAGCACAGCTTAACCTATGGCTCCTACAGCTCCAAATCCAAAGGTGGAGGTTTTCTAAATGAAACCTCAGCAGTGGGGAAAACCAGCAAACCTGGGTGTTTTCTGTCCGGGTGTTTGGAGGAGTTGTGTGTTCTTTTGTGCCATTAGAAGAAATGTGCTCAGTAGGGTAAAGCCTCGTGCTGGGTAAAACGCTGCAATTAAGAGTTCTGCATACATCCAGGAGAGCTGAGCGTTTGTGTGTGGGTTGGCACCGAAGTCACTTCAGCTGTAGTAAGGAGAGCTCTTCTCACTCCATGCAGGCAGTTTTGCACCAAAAAAGGAGGTGGCAACAAGCACATCTCCCTCCCAATAGCTGGGAACTGTAATGCAATGAAAGGGAAGAACGTAGGGAGCTGTAGGAGGCTGAATACCCAGCTTTAGTTTGCTGCCTCCTTCTTACTGCTTTAAAGCTGCAATAGAGGACCTGTAATGGGCTAATAAATGGCACAGATAAGTCACTGCGCCAGGTCCAGGACAAAGCAGCCTGCCTCAGGGCTGGCTGTTTTTGCTCTGAGTAGGTGGTGCTGCATAGTTGCTTCTGTGCTTCAACTCAGCCCTTGCACTGCAGTAGCTCAGGCCTCCCTCACTGCTTTGTGGTCTGGTGGATACTTTTCCTAG
Seq C2 exon
GAGAACCTGAAGCACTGGATCCAAGGGAACCTGACCAACTGCGGACGGTCGGTCTTTCTCTTTGAGGAGATGGACAAGATGCACCCGGGCCTGATTGATGTGATCATGCCATTCCTGGGACCCTCCTGGGTCGTGTATGGGACCAACTACCGCAAAGCAATCTTCATCTTCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004996:ENSGALT00000008001:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACGTGGAGCGCTATAAG
R:
AAGATGAAGATTGCTTTGCGGT
Band lengths:
190-1195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]